Burkholderia ambifaria MC40-6: BamMC406_6340
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Entry
BamMC406_6340 CDS
T00684
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bac
Burkholderia ambifaria MC40-6
Pathway
bac03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BamMC406_6340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bac03400
]
BamMC406_6340
Enzymes [BR:
bac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BamMC406_6340
DNA repair and recombination proteins [BR:
bac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BamMC406_6340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ACB68772
UniProt:
B1Z4V9
LinkDB
All DBs
Position
3:complement(942882..945731)
Genome browser
AA seq
949 aa
AA seq
DB search
MAGKLDPYRRKRHFGATPEPEGAHGRRTQAAAKAAARTRARGAHPLRFVIQEHHARRLHY
DFRLELDGTLKSWAVPKGPSFDPSVKRLAVHVEDHPLEYASFEGQIPEGHYGAGSVVVWD
EGTWTPDGGLAQAREGYRAGKLTFRLDGEKLHGGWALVRSGRQQGRQEQWLLIKERDDDA
RSMDEFDVVGERPGSVHDGAASARADAKNGSARARGSRQGRSEKPATRAARHDDRAHDGH
AGAPVDPSRIEGAVRAPLPEHVAPQLATLVDGPPTQGDWCYELKFDGYRILARISGKGAR
RHVKLMTREGRDWTAKLRAQRDALAALDVDAAWLDGEAVVLGKNGLPDFQALQNAFGGGH
SDEITLFVFDLPYLDGYDLRDAPLTARRALLEPLLADSDPTRLRFSPDLGDDVASLIASA
CDTGLEGLIGKRAESRYRAGRSPAWIKLKCRRRQEFVIGGYTEPSGSRHGFGALLLGVHE
PAADGKRRRGPGPLRYVGRVGTGFDTRMLDRLTPILRKHERDKMPFDPPPRERSRTPVHW
IEPVLVAECEFAEWTGDGIVRQAAFIALRDDKPAARIVREVPKHTETEVQMDQRETAQHE
RHKPGRTAHAGRDTGDTSDTSDTSDTSDTSDTSDGKHPARSRGSRRAEADDTGPDQLGRV
RISHPERVIDSHSGTRKIDLARYWQWVAPWLLPDLKGRPVSLVRAPGDISGELFFQKHAE
RREIPFVTQHDGLDPGHGPLLSLDSVDALLGAAQMGTIELHTWNAHASNIERPDRIVFDL
DPDPALPWSAMIDAAQLVRGLLDELGLISFCKTSGGKGLHVVVPITRHMGWDEVKDFSRA
VAQHVAGALPDRFTATMGPKHRRGKIFIDYLRNGRGASTIAAYSVRARPGLGVSVPLRWD
EVPDTTGGAQWTIDTLHERLDRLKRDPWDGYDDTRQRITAQMRARLGTS
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atggccggcaagctcgatccgtatcggcgcaagcgccacttcggcgcgacgccggaaccc
gaaggcgcgcacgggcgccgtacgcaggccgctgcgaaggccgccgcgcgcacgcgcgca
cggggcgctcacccgctgcgcttcgtgatccaggagcaccatgcacggcgactgcactac
gacttcaggctcgaactcgacggcacgctgaaatcgtgggccgtgccgaaggggccgagc
ttcgatccgtcggtgaagcgcctcgcggtgcacgtcgaggaccatccgctcgaatacgcg
tcgttcgaaggccagattccggagggtcattacggcgcgggctcggtcgtcgtctgggac
gagggcacgtggacgcccgatggcgggctcgcgcaggcacgcgaaggctatcgcgcgggc
aagctgacgttccggctcgacggtgaaaagctgcacggcggctgggcgctcgtgcgcagc
gggcggcagcaggggcggcaggagcagtggctgctgatcaaggagcgcgacgacgacgcg
cgcagcatggatgaattcgacgtcgtcggcgagcggccgggcagtgtgcacgacggcgcg
gcgtcggcgcgtgcggacgcgaagaacggctcggcgcgcgcgcgcggttcacggcaaggg
cgcagcgagaagcccgccacgcgcgccgcgcggcatgacgaccgggcccacgacggccac
gccggcgcgcctgtcgacccttcccggatcgaaggcgcggtgcgcgcgccgctgcccgag
cacgtcgcgccgcaactcgcgacgctggtcgacggtccgccgacgcagggcgactggtgc
tatgaactgaagttcgacggctaccggattcttgcgcgcatttccggcaagggcgcgcgc
cggcacgtgaagctgatgacgcgcgaaggccgcgactggaccgcgaagctgcgcgcgcaa
cgcgacgcgctcgcggcgctcgatgtcgacgccgcatggctcgacggcgaggccgtcgtg
ctcggcaagaacggcctgcccgatttccaggcattgcagaacgcattcggcggcgggcat
tcggacgagatcacgctgttcgtgttcgacctgccttatctcgacggttacgacttgcgc
gacgcaccgctcaccgcgcgccgcgcgttgctcgaaccgctgctcgccgacagcgatccc
acgcggctgcgcttttcgcccgatctcggcgacgacgtcgcatcgctgatcgcgagcgcc
tgcgacaccggcctcgaagggctgatcggcaagcgcgccgagtcgcgctatcgcgccgga
cgctcgcccgcgtggatcaagctcaagtgccggcgccggcaggagttcgtgatcggcggc
tataccgagccgtcgggcagccggcacggcttcggcgcgctgctgctcggcgtgcacgaa
ccggccgcggacggcaagcggcggcgcgggccggggccgctgcgctacgtcggccgcgtc
ggcaccggcttcgacacgcggatgctcgaccggcttactcccatcctgcgcaagcacgaa
cgcgacaagatgccgttcgatccgccgccgcgcgaacgctcgcgcacgcccgtgcactgg
atcgagccggtgctcgtcgccgaatgcgaattcgcggaatggaccggcgacggtatcgtg
cggcaggccgcgttcatcgcgctgcgcgacgacaagccggcggcacggatcgtccgcgag
gtgccgaagcatacggaaacggaggtgcagatggatcagcgtgaaaccgcgcagcacgaa
aggcacaagcctggccgcacggcgcacgccgggcgcgacacgggcgataccagcgacacc
agcgacaccagcgacaccagcgacaccagcgacaccagcgacggcaaacaccccgcgcgc
tcacgcggctcccgtcgcgccgaggccgacgataccggccccgaccagctcggccgcgtc
cgcatcagccatccggagcgcgtgatcgattcgcacagcggcacgcgcaagatcgatctg
gcgcgctactggcaatgggttgcgccgtggctgctgccggacctgaagggccggcccgtg
tcgctcgtgcgcgcgccgggcgacatctcgggcgagctgttcttccagaagcacgcggag
cgccgcgagatcccgttcgtcacgcagcacgacgggctcgatccgggccatggcccgctg
ctgtcgctcgacagcgtcgacgcgctgctcggcgccgcgcaaatgggcacgatcgaactg
catacgtggaatgcgcacgcgtcgaacatcgagcggcccgaccggatcgtgttcgacctc
gatcccgatccggcgctgccgtggagcgcgatgatcgacgccgcccagctcgtgcgcggg
ctgctcgacgaactcggcctcatctcgttctgcaagacgagcggcggcaaggggctgcac
gtcgtcgtgccgatcacgcggcacatgggatgggacgaagtgaaggacttctcgcgcgcg
gtcgcgcagcatgtcgcgggtgcgttgcccgatcgcttcaccgcgacgatgggcccgaag
caccggcgcggcaagatcttcatcgactacctgcgcaacggccgtggcgcgagcacgatc
gccgcgtactcggtgcgcgcgcggcccgggctcggcgtgtcggtgccgctgcgctgggac
gaggtgcccgacacgacgggcggcgcgcaatggacgatcgacacgctgcacgaacgcctc
gatcgactgaagcgcgatccgtgggacggctatgacgacacgcgccagcggatcaccgca
caaatgcgcgcgcggctcggcacgtcgtga
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