Bacillus sp. BS34A: BS34A_07590
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Entry
BS34A_07590 CDS
T03833
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bacl
Bacillus sp. BS34A
Pathway
bacl03030
DNA replication
bacl03410
Base excision repair
bacl03420
Nucleotide excision repair
bacl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bacl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BS34A_07590 (ligA)
03410 Base excision repair
BS34A_07590 (ligA)
03420 Nucleotide excision repair
BS34A_07590 (ligA)
03430 Mismatch repair
BS34A_07590 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bacl03032
]
BS34A_07590 (ligA)
03400 DNA repair and recombination proteins [BR:
bacl03400
]
BS34A_07590 (ligA)
Enzymes [BR:
bacl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BS34A_07590 (ligA)
DNA replication proteins [BR:
bacl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BS34A_07590 (ligA)
DNA repair and recombination proteins [BR:
bacl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BS34A_07590 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BS34A_07590 (ligA)
MMR (mismatch excision repair)
DNA ligase
BS34A_07590 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BS34A_07590 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
zf-NADH-PPase
5_3_exonuc
RNA_pol_A_CTD
HHH_3
zf-IS66
HHH_8
HNOB
zf-tcix
Zn-ribbon_8
Motif
Other DBs
NCBI-ProteinID:
CEJ76224
LinkDB
All DBs
Position
I:721592..723598
Genome browser
AA seq
668 aa
AA seq
DB search
MDKETAKQRAEELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDLRTPDSP
TQRVGGAVLEAFQKVTHGTPMLSLGNAFNADDLRDFDRRVRQSVGDDVAYNVELKIDGLA
VSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMNRELSIEVRGEAYMPKRSFEA
LNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVETQSQGLD
FLDELGFKTNQERKKCGSIEEVITLIDELQAKRADLPYEIDGIVIKVDSLDQQEELGFTA
KSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAILEPVKVAGTTVSRASLHNEDLI
KEKDIRILDKVVVKKAGDIIPEVVNVLVDQRTGEEKEFSMPTECPECGSELVRIEGEVAL
RCINPECPAQIREGLIHFVSRNAMNIDGLGERVITQLFEENLVRNVADLYKLTKERVIQL
ERMGEKSTENLISSIQKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKKASKEE
LLAVDEIGEKMADAVITYFHKEEMLELLNELQELGVNTLYKGPKKVKAEDSDSYFAGKTI
VLTGKLEELSRNEAKAQIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEE
QLMGELKK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacaaagaaacagcgaagcagcgggcagaagaactgcgccgcaccatcaacaagtat
agctatgaatattacaccttagatgaaccgagcgtcccagatgccgaatacgacagattg
atgcaggagctgatcgcgatcgaggaggagcacccagacctcagaacgcctgactctcct
acgcagcgcgtcggcggagccgtgcttgaagcgtttcagaaagtcacccacggcacaccg
atgctcagtctgggcaacgcctttaatgctgatgatcttcgtgatttcgaccgccgtgtg
cgccagtccgtcggcgacgatgtggcgtataatgtggagctgaaaatagacggtcttgct
gtttctctccgttatgaagacggctattttgtcagaggggccacaagaggtgacgggacg
acgggagaggatatcacggagaatctgaagacgatccgcaatatcccccttaaaatgaac
cgtgagctgtcgatcgaagtgcgcggcgaggcgtatatgccgaagcgttcgtttgaagca
ctcaatgaggaacggattaaaaatgaggaagaaccgttcgccaatccgcgaaatgccgcg
gcgggatctctcagacagctcgatccgaaaattgcagcgaaacgaaacctcgatatcttc
gtctacagtatagcggagcttgacgagatgggtgtagagacgcaaagccaagggcttgat
tttctcgacgaactcggatttaaaacgaatcaggaacgaaaaaaatgcggcagcatagaa
gaagtcattacgctgatcgatgagcttcaggcgaagcgcgcggacctgccgtacgaaata
gacggcattgtcattaaagtcgattctctcgatcaacaggaggagctcggttttacggcg
aaaagcccgcgctgggccatcgcgtataagtttcctgctgaagaggtcgtgacgaagctt
ctcgatatcgaattaaatgtcggcagaacgggtgtgattacgccgactgcgattcttgag
ccggtaaaagttgccggcacaacggtctcaagagcatcccttcataacgaagatttaatt
aaagagaaggacattcggattttggataaggttgtcgtcaaaaaagcgggcgatatcatc
ccggaagttgtgaatgtcctcgttgaccagcgcacaggagaagaaaaggaattcagcatg
ccgacggaatgtcctgaatgcggcagtgaactcgtccggatcgaaggagaagtggcgctt
cgctgcattaaccctgaatgtccggcgcaaatccgggaagggcttatccatttcgtttcc
cggaatgccatgaacattgatgggctcggcgaacgagtgatcacacagctgtttgaggaa
aaccttgtccgcaatgtggcagatttatataagctgacgaaggaacgagtcatccagctc
gagcgcatgggcgaaaagtccactgaaaacctgatcagctccatccaaaaatcaaaagaa
aattcgttagagcgcctgctgtttgggcttggcatccgttttatcggatcaaaggccgca
aagacgcttgccatgcattttgaaagcttggagaacctgaaaaaagcctctaaagaggaa
cttctcgcggtagatgaaatcggtgaaaaaatggctgatgctgtgatcacctattttcat
aaagaagaaatgcttgaactcttgaatgaacttcaggagctgggcgtaaacacgctctac
aaaggcccgaaaaaagtaaaagcagaggacagcgactcttactttgctggtaaaacaatt
gttctgacaggaaagctggaagagctgtcaagaaacgaagccaaagcgcaaatcgaagcg
ctgggcggaaagctgactggaagcgtcagcaaaaacacagacttagtcatcgccggagaa
gcggcgggaagcaagctgacaaaagcacaagagctgaacattgaagtgtggaatgaagaa
cagttaatgggagagctaaagaaataa
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