KEGG   Bacillus sp. OxB-1: OXB_3302
Entry
OXB_3302          CDS       T03635                                 
Name
(GenBank) DNA ligase d
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
baco  Bacillus sp. OxB-1
Pathway
baco03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:baco00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    OXB_3302
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:baco03400]
    OXB_3302
Enzymes [BR:baco01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     OXB_3302
DNA repair and recombination proteins [BR:baco03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     OXB_3302
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M RNA_ligase DNA_ligase_A_C DNA_primase_S
Other DBs
NCBI-ProteinID: BAQ11771
UniProt: A0A0A8JMU5
LinkDB
Position
complement(3309078..3310901)
AA seq 607 aa
MKPMLLTTSETIPAGKGWTYEAKYDGFRCILVWEPNGIMLFSRTGKVLNEKFPEVVDYCK
QIQERLVAHLPLTLDGELVHLINPFKSEFSTVQARGRMRNEQVIQQHRKDFPCHYMVFDL
VKYKGEDLTGLPLQKRKTKLRKLFGKIPSSESSQLQAVESFKDPKEVWERIIENLGEGIV
AKRKSSTWSNEKRSPHWVKVKNWRLVNVIITQYDKMNGYFTGAVHRDGELVNVVTFLHGL
SEEETDTLRKLFHENGHRTSETVWELAPSVCATIACISFDGRHLREPRFHSFDFEIEPGQ
IQWKLMLRQLSPLPPSFQMTHPDKPVWPELGLVKDDYLLYLQQAASFMLPFLKNRLLTVI
RYPHGVPGERFYQKNAPDYTPEFIQTEWEEDIRYIVCQDGKSLLWLGNQLALEYHIPFRT
IDTECPTEIVFDLDPPSVQEFSLAVEAALRMKAIFDRFQLTSFVKTSGGKGLQLYVPLPY
NRFSYEETRVFTKFVCDFLCEQEPAWFTTERMKKKRGNKLYLDYVQHQEGKTIVAPYSPR
GNEQGLVATPLRWEEVTSSLRPEQFPIPVVLERMKTIGNPFRNFRPVGEAQPFDAVLNEL
TSLLGRP
NT seq 1824 nt   +upstreamnt  +downstreamnt
atgaaaccgatgctactgacgacgtccgaaacgatccctgccggaaagggttggacatat
gaagctaaatatgacggatttcgctgcatccttgtctgggaaccaaatggtatcatgctt
tttagcagaaccgggaaagttctaaatgaaaagtttccggaagtagtggactactgcaag
caaatccaggaacggctggtcgcccatcttccattgacgttagacggtgaactcgtccac
ttgatcaatccgttcaaaagcgagttctccaccgtgcaagcaagaggacgaatgcgaaac
gaacaggtcattcagcagcataggaaggacttcccttgtcattacatggtgttcgattta
gtgaaatataaaggggaagatctaacagggcttccgttgcaaaaacggaagacgaaactg
agaaagctgttcggcaaaatcccatccagcgaatcgagtcaacttcaagcggttgaatcg
ttcaaggatccgaaggaagtatgggaacggatcatcgagaacttgggagaagggattgtc
gccaaacgtaaatcgagtacatggtccaatgaaaaacgctcaccccattgggtgaaggtg
aaaaactggagactagtcaacgtcatcatcactcaatacgataaaatgaacggctatttc
acaggtgcggtccatcgagacggggaattggtgaatgtggtcactttccttcatggacta
tcagaagaagagacggacactttgcggaaactttttcatgaaaatggacatcgcacgtca
gaaacggtgtgggagctggctccgtccgtttgtgccacaatcgcctgcatcagttttgat
ggaaggcatttgcgggaaccgaggtttcacagttttgattttgaaatcgagccgggtcaa
attcaatggaaacttatgcttcgccaattgtccccgcttccgccatccttccaaatgacc
catcccgacaaaccggtctggccggaactcggtctcgtgaaagacgactatttgctttac
ttgcaacaggcggcttcgttcatgcttccgtttttaaaaaatcggctgctgaccgtcatt
cgatatccgcatggcgtaccgggggaacgcttttatcagaaaaacgcccccgattacacg
ccggaattcattcaaaccgaatgggaagaggatatccgatatatcgtttgccaggatggc
aagtcactgctttggcttggcaatcaactggctctcgaataccatatcccgtttcggacg
atcgatacggagtgcccgacagaaatcgtcttcgacttggatccgccttctgttcaggag
ttcagcttggcggttgaagcggcgctccggatgaaagcgattttcgaccggttccagctc
acatcattcgtcaagacatccggcggaaaagggttgcagctgtatgttccactgccctat
aatcgattctcgtatgaggagacgagggtgttcacgaaatttgtctgcgattttttatgt
gagcaggagcccgcctggttcacgacggagagaatgaaaaagaagcgtggaaataaatta
tatttggactatgtccagcatcaggaaggcaagacgatcgtggcgccgtactcgccgcga
ggcaatgagcaggggcttgttgcaacgccgctccgctgggaagaagtgacatcttctctc
agaccggagcaatttccgatccctgtcgtgttggaacggatgaagaccatcggtaacccg
tttcggaatttccgtccagtcggggaggctcagcctttcgacgcggtattgaacgaactt
acttcgctgctgggacgtccatga

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