Borrelia afzelii (FLI): BAPKO_0880
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Entry
BAPKO_0880 CDS
T00383
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
baf
Borrelia afzelii (FLI)
Brite
KEGG Orthology (KO) [BR:
baf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
BAPKO_0880 (hrpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
baf03041
]
BAPKO_0880 (hrpA)
Enzymes [BR:
baf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BAPKO_0880 (hrpA)
Spliceosome [BR:
baf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
BAPKO_0880 (hrpA)
Complex C
U4/U6.U5 tri-SnRNP related factors
BAPKO_0880 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
OB_NTP_bind
DEAD
HA2_N
ResIII
AAA_22
AAA_19
Flavi_DEAD
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ABH02104
LinkDB
All DBs
Position
complement(873629..876100)
Genome browser
AA seq
823 aa
AA seq
DB search
MNDFKLPIYKYKDELIKVLKKNNVLIVESPTGSGKTTQLPRIIYEAGFAKLGKIGVTQPR
RIATISIAEYIAKHIGVNVGEEVGYKIRFEEITSPKTKIKLMTDGVLLQELKKDTLLYEY
DVIIIDEAHERSLNIDFILGLIKDISRKRDDFKIIISSATINTKIFSKYFNNAPIVSIET
ITYPVQIIYNPPLLNTSKGMILKIKEIVLNVIKEKKAGDILIFLSGEKEIKETIKELQEL
NSKKNLIIFPLYGRMPKEAQEQIFVPTPKNKRKIIVSTNIAETSITIENIKIVIDSGKVK
TNKFQTKTHTYSLQEVPISKSSATQRAGRAGRLSKGTCYRLYKREDYQLREDYQKEEIYR
TDLSEVILRMADIGIRDFTHFDFISKPSKHSIQTASKILKSLDAINNKNELTEIGKYMIL
FPLVPAHSRALVEAMINYPQAIYQTTIGLSFLSTSGIFLLPQNEEMEARQAHLKYKNPMG
DLIGFINIFEDFKKAANKEAFTKENYLDLQGLEEIVNVQMQLENIVSKLNIPIIEKGVFD
NEGYLKSIMRGMRDYICFKTSKKKYKTIKAQNVIIHPGSLISTDSVKYFVAGEIIETTKM
YARSIGVLKKEWIDDINLNEEFEHKNIPDKEKQIANAKQTKIINEIKIGRKIFKAEYKNN
IYVIQINLETLKEMISKNELNNQNNEDLKKIKIQLMHKNATVFSNKKFLDTIEIVKGMGK
NWHCIKKYETNNVNIDEPEKMKNLLECTMQFIISPSKKTALFLSLETDRFGNFRLKPKQN
FIMAIEESMESIKSLIENEEYIQKLHFIKKLINKVYKKLNYFF
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatttcaaactcccaatttataaatacaaagacgaattaattaaagtattaaaa
aaaaataatgttttaattgttgaaagtccaacgggcagtggaaaaactacccaactacca
agaataatatatgaagcgggttttgcaaaattaggaaaaattggagtaactcaaccgaga
agaatagctacaatatcaatagcagaatatattgccaagcatattggtgtaaacgttgga
gaagaagttggttacaaaataagatttgaagaaattacaagtccaaaaaccaaaatcaaa
ttaatgactgacggggttcttctgcaagagcttaaaaaagatacattgctttatgaatat
gacgtaatcataatagatgaagcacacgaacgaagtttaaatatcgattttatattaggc
cttattaaagacatttcaagaaaaagggacgattttaaaataataatttcatctgctaca
ataaacacaaaaatattttcaaaatatttcaataatgcaccgattgtcagtattgaaact
atcacgtatccagtacaaataatatacaatccccctcttttaaacacatcaaaaggaatg
atattaaaaataaaagaaattgtcttaaacgtaataaaagaaaaaaaagcaggggatatt
cttatattcttatctggagagaaagaaataaaagaaactataaaagaattacaagaatta
aactcaaaaaaaaatttaataatctttcctttatacggcagaatgcctaaagaagcacaa
gagcaaatatttgtacctacccctaaaaataaaagaaaaataatagtgtcaacaaacatt
gcagaaacttccatcacaattgaaaatattaaaatagtaatcgatagcggaaaagttaaa
acaaataaattccaaacaaaaactcatacctattcgctccaagaagttccaatttcaaaa
tcatcagcaactcaaagagccggtcgagcaggaagactttcaaaaggaacttgctacaga
ctttataaaagagaagattatcaactaagagaagattatcaaaaagaagaaatatataga
acagacctatctgaggtaatactaagaatggcagatattggaatcagagattttacccac
tttgattttatatcaaaaccatcaaagcattcgattcaaactgcaagcaaaatattaaaa
tctctggatgccataaacaataaaaacgaacttacagaaattgggaaatatatgatacta
ttcccattagtgccagcacattcaagagcattagttgaagcaatgataaattatccacaa
gcgatctatcaaaccacaataggtctatcatttttatccacaagcggaatttttctacta
ccccaaaatgaagaaatggaagctagacaagctcatttaaaatataaaaatccaatggga
gatttaattgggtttattaatatctttgaagattttaaaaaagctgcaaataaagaagct
ttcacgaaggaaaattatttagacctacaaggacttgaagagatagtaaatgtacaaatg
caacttgaaaacattgttagcaaattgaatataccaataatagaaaaaggtgtttttgac
aacgaaggatatttaaaatcaataatgagggggatgagagattatatttgttttaaaact
tcaaaaaagaaatataaaaccatcaaagctcaaaacgtaataattcatcctggatcactt
attagtaccgattctgtgaaatatttcgttgcaggagaaattatagaaactacaaaaatg
tatgcaagatccattggtgtgttaaaaaaagaatggattgatgatattaaccttaatgaa
gagtttgagcataaaaacatacctgacaaagagaaacaaatagcaaatgccaagcagaca
aaaattatcaatgagatcaaaataggaagaaaaattttcaaagcagagtacaaaaacaac
atttatgtaatacaaattaatctagaaacactaaaagaaatgatttcaaaaaacgaatta
aataatcaaaataatgaggatttgaaaaaaattaaaatacaattgatgcataaaaatgca
acagttttcagcaataaaaaatttttagatactatagaaatagtcaaaggcatgggaaaa
aattggcattgtataaaaaaatatgaaacaaacaatgtaaacattgatgaacctgaaaaa
atgaaaaatcttctagagtgtacaatgcagtttataatctctccctccaaaaaaactgct
ctttttttatcattagaaacagatcgctttggaaattttcgactaaaacccaaacaaaat
ttcataatggcaatagaagaatctatggaaagcataaaaagcctaatagaaaacgaagaa
tacatacaaaaactacattttataaaaaaattaataaataaagtttacaaaaaattaaat
tactttttttaa
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