Borreliella afzelii HLJ01: BafHLJ01_0888
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Entry
BafHLJ01_0888 CDS
T02298
Symbol
pnpA
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bafh
Borreliella afzelii HLJ01
Pathway
bafh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bafh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BafHLJ01_0888 (pnpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bafh03019
]
BafHLJ01_0888 (pnpA)
03016 Transfer RNA biogenesis [BR:
bafh03016
]
BafHLJ01_0888 (pnpA)
Enzymes [BR:
bafh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BafHLJ01_0888 (pnpA)
Messenger RNA biogenesis [BR:
bafh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BafHLJ01_0888 (pnpA)
Transfer RNA biogenesis [BR:
bafh03016
]
Prokaryotic type
tRNA degradation factors
BafHLJ01_0888 (pnpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KhpA-B_KH
Motif
Other DBs
NCBI-ProteinID:
AFU75116
LinkDB
All DBs
Position
850606..852756
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AA seq
716 aa
AA seq
DB search
MKIGRDELVFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEKYY
AAGKIPGGFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNPPDI
VGMNAAFTAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNGITM
VEGGANEVGEDILLSAIDSAHEYIKQICNAQKEFLDIVGEKEKLPLAFEEKIFEFKEELR
DFIYADLKEACFVKGKLNRDKAITLLRNKSYEHFSSLEKLDDSNESLFYKAFDDFEKEIV
RNSILNDKIRTDGRTPNEIRDILAEVDILSRTHGSSLFTRGETQALAVTTLGTSIDEQIM
DDIDGDKRLNFMLHYNFPPFSVGETGRLMTGRREIGHGHLAQRALESMIPGKNDFPYTIR
VVSEILESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSDILGEED
HLGDMDFKVAGTENGITGFQMDIKIENVTKQLMRDALEQARVGRIHILSIMNSVISNSRV
GISKYAPKIIQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDDFKMQ
KAKEKIESIVREPKVGEIYEGTVKKINSFGAFIELTPTKEGFLSTRLKSRDSKYGSGRFG
HGNRYSRFGSGGDNIRGNAGLVRPPKLEEGQRIKVRIVDIDKFGKIDLEIVRDKDY
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaataggtagagacgagttggtgtttgagacgggatttatggccaagcaggctaat
ggatcggttcttgcaacttatggaggatcttcggttcttgcgactgtttgttgttcaaat
aatgtgagagaagatttagattttgtcccgctttctgttgaatataatgagaaatattat
gcagctggtaagattccaggaggatttattaaaagagagggaaagccaaaggataaagaa
atacttgtttctaggttaatagatagaccaatgagacctctttttgataaaagatttggt
cgagaaattcaagtaattcctacgactttggctacagatcaactcaatccccctgatatt
gttggaatgaacgccgcttttacagcagtttttttgtcagatattccgtttaatggtcca
attgcagctgttagaatggtttatttgaatggtaagtttatagtaaatccttcgtttgaa
gagattcatgattctgatcttgatattgttgttgcaggaagtttaaatggaattacaatg
gtagaaggcggtgctaatgaggttggtgaagatattttattgtcagcaatagacagtgca
catgaatatattaaacaaatttgcaatgctcaaaaagaatttttagatattgtaggggag
aaggaaaaacttcctttagcttttgaagaaaaaatctttgaatttaaagaggagcttagg
gattttatttatgccgatcttaaagaagcttgttttgttaaaggaaagcttaatagagat
aaagccataactttgctgcgaaataaatcttatgagcatttttcttctcttgagaaattg
gatgatagtaatgagtcccttttttataaagcttttgatgattttgagaaggagattgtt
agaaattctattcttaatgataagattaggacagacggtagaacgcccaatgaaataaga
gatattcttgcagaagttgatattttaagtagaacgcatggatcttcactttttacaaga
ggagagacgcaagctttagctgtaactactcttggtacaagcattgatgagcaaataatg
gatgatatcgatggtgataagcgtcttaattttatgcttcattacaattttcctccattt
tcagttggtgagactggtaggcttatgactggtaggcgtgagattggccacggccattta
gctcaaagagctttagaatcaatgattccgggaaaaaacgattttccgtatactattaga
gtagtttctgagattttagaatctaacggatcttcttcaatggctactgtttgtgctgga
agcatgtctttaatgtctgcgggggttcctgttaaaaggcaagttgcaggaatagccatg
gggcttattagcgaaggggataaatatgtagttctaagtgatattcttggggaagaggat
catttaggtgatatggactttaaagtggctggtacagaaaatgggattactggctttcaa
atggatattaagattgaaaatgttactaagcagttaatgagagatgctcttgagcaggca
agagtaggtaggatacacatactgtctattatgaattctgtaatttcgaattcaagagtt
ggtatatctaagtatgctcccaaaattattcaattgcaaattgatattgataagatatcc
cttgtaataggatctactggaaaaactgttaaggctataacagatgaatttgaagttaag
gttcaaattgagcaaaatggaaagattattctttttggtgatgatgattttaaaatgcaa
aaggctaaagaaaaaatagagagtattgtaagagaaccaaaagtaggtgaaatttacgaa
ggaacagttaaaaagattaatagctttggagcttttattgaacttactcctacaaaggaa
ggatttttaagtactcgcttgaaatctagagacagcaagtatggttctggaagatttggg
catggtaatagatattctagatttggtagtggtggagacaatataaggggcaatgcagga
ttagttcgacctccaaaattagaagaagggcagcgaattaaagttagaatagttgatata
gataaatttggaaaaattgatcttgaaattgttagagataaagattattaa
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