Burkholderia ambifaria AMMD: Bamb_5610
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Entry
Bamb_5610 CDS
T00398
Name
(GenBank) ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bam
Burkholderia ambifaria AMMD
Pathway
bam03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Bamb_5610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bam03400
]
Bamb_5610
Enzymes [BR:
bam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Bamb_5610
DNA repair and recombination proteins [BR:
bam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Bamb_5610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABI91157
UniProt:
Q0B3W6
LinkDB
All DBs
Position
3:complement(44306..47104)
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AA seq
932 aa
AA seq
DB search
MAGKLDPYRRKRHFGATPEPEGAHGHHAKAGAKPAARASARGTHPLRFVIQEHHARRLHY
DFRLELDGTLKSWAVPKGPSFDPSVKRLAVHVEDHPLEYASFEGQIPEGHYGAGSVVVWD
EGTWTPDGGVAQAREGYRAGKLTFRLDGEKLHGGWALVRSGRQEGRQEQWLLIKERDDDA
RSMDEFDVVGERPGSVHDGAASARADAKNGSARGSRSGQREKSGTSAARHDDHRHDGHAG
TPIDPSRIEGAVRAPLPEHVAPQLATLVDGPPTQGDWCYELKFDGYRILARISGKGARRH
VKLMTREGRDWTAKLRAQRDALAALDVDAAWLDGEAVVLGKNGLPDFQALQNAFGGGHSD
EITLFVFDLPYLDGYDLRDAPLTARRALLEPLFADSDPTRLRFSPDLGNDVASLIASACD
TGLEGLIGKRAESRYRAGRSPAWIKLKCRRRQEFVIGGYTEPSGSRHGFGALLLGVHEPA
ADGKRRRGPGPLRYVGRVGTGFDTRMLDRLTPILRKHERDTMPFDPPPRERSRTPVHWIE
PVLVAECEFAEWTGDGIVRQAAFIALREDKPAARIVREVPKHTETEVQMEQRQTTRHERH
KPKGAARAERDTSDASDGKHPARSRGSRRAEADDTGPDQLGRVRISHPERVIDSHSGTRK
IDLARYWQWVAPWLLRDLKGRPVSLVRAPGDISGELFFQKHAERREIPFVTQHEGLDPGH
GPLLSLDSVDALLGAAQMGTIELHTWNAHASNIERPDRIVFDLDPDPALPWSAMIDAAQL
VRGLLDELGLISFCKTSGGKGLHVVVPITRHMGWDEVKDFSRAVAQHVAGALPDRFTATM
GPKHRRGKIFIDYLRNGRGASTIAAYSVRARPGLGVSVPLRWDEVPDTTGGAQWTIDTLH
ERLDRLKRDPWDGYDDTRQRITAQMRARLGTS
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggccggcaagctcgatccgtatcggcgcaagcgccacttcggcgcgacgccggaaccc
gaaggcgcgcacgggcatcatgcgaaggccggtgcgaagcccgccgcgcgcgcgagcgca
cggggcactcacccgctgcgcttcgtgatccaggagcaccacgcgcggcgactgcactac
gactttcggctcgaactcgatggcacgctgaagtcgtgggccgtgccgaaggggccgagc
ttcgatccgtcggtgaagcgcctcgcggtgcacgtcgaggaccatccgctcgaatacgcg
tcgttcgaaggccagattccggagggccattacggcgcgggctcggtcgtcgtatgggac
gaaggcacgtggacgcccgatggcggggttgcgcaggcacgcgaaggctatcgcgcgggc
aagctgacgttccggctcgatggcgaaaagctgcacggcggctgggcgctcgtgcgcagc
gggcggcaggaggggcggcaggagcagtggctgctgatcaaggagcgcgacgacgacgcg
cgcagcatggacgaattcgacgtcgtcggcgagcggccgggcagtgtgcacgacggcgcg
gcgtcggcgcgggcggacgcgaagaacggctcggcgcgcgggtcgcgaagcgggcagcgc
gagaagtccggcacatccgcggcgcggcatgacgaccaccggcacgacggccacgccggc
acgcccatcgacccttcccggatcgaaggcgcggtgcgcgcgccgctgcccgagcacgtc
gcgccgcaactcgcgacgctggtcgacggtccgccgacgcagggcgactggtgctatgaa
ctgaagttcgacggctaccggatccttgcgcgcatttccggcaagggcgcgcgccggcat
gtgaagctgatgacgcgcgaaggccgcgactggaccgcgaagctgcgcgcgcaacgcgat
gcgctcgcggcgctcgacgtcgacgccgcgtggctcgacggcgaggccgtcgtgctcggc
aagaacggcctgcccgatttccaggcgttgcagaacgcattcggcggcgggcattcggac
gagatcacgctgttcgtgttcgacctgccttatctcgacggttacgacctgcgcgacgcg
ccgctcaccgcgcgccgcgcgttgctcgaacccttgttcgccgacagcgaccccacgcgg
ctgcgcttttcgcccgatctcggcaacgacgtcgcatcgctgatcgcgagcgcatgcgac
accggcctcgaagggctgatcggcaagcgcgccgagtcgcgctatcgcgccggacgctcg
cccgcgtggatcaagctcaagtgccggcgccggcaggagttcgtgatcggcggctatacc
gagccgtcgggcagccggcacggcttcggcgcgctgctgctcggcgtgcacgaaccggcc
gcggacggcaagcggcggcgcgggccggggccgttgcgctacgtcggccgcgtcggcacc
ggcttcgacacgcggatgctcgaccggcttacccccatcctgcgcaagcacgaacgcgac
acgatgccgttcgatccgccgccgcgcgaacgctcgcgcacgcccgtgcactggatcgag
ccggtgctcgtcgccgaatgcgaattcgcggaatggaccggcgacggcatcgtgcggcag
gccgcgttcatcgcgctgcgcgaggacaagccggcggcacggatcgtccgcgaggtgccg
aagcatacggaaacggaggtgcagatggaacagcgtcaaaccacgcggcacgaaaggcac
aaacccaagggcgcggcgcgcgcggagcgcgacacgagcgacgcaagcgatggcaaacac
cccgcacgttcccgcggctcccgtcgcgccgaggccgacgataccggccccgaccagctc
ggccgcgtgcgcatcagccatccggagcgcgtgatcgactcgcacagcggcacgcgcaag
atcgatctcgcgcgctactggcaatgggtcgcgccgtggctgctgcgggacctgaagggt
cgccctgtgtcgctcgtgcgcgcaccgggcgacatctcgggcgagctgttcttccagaag
cacgcggagcgccgcgagatcccgttcgtcacgcaacacgaagggctcgatccgggccat
ggcccgctgctgtcgctcgacagcgtcgatgcgctgctcggtgccgcgcaaatgggcacg
atcgagctgcatacgtggaatgcgcacgcgtcgaacatcgagcggcccgaccggatcgtg
ttcgacctcgatcccgatccggcgctgccgtggagcgcgatgatcgacgccgcgcagctc
gtgcgcgggctgctcgacgaactcggcctcatctcgttctgcaagacgagcggcggcaag
gggctgcacgtcgtcgtgccgatcacgcggcacatgggatgggacgaagtgaaggatttc
tcgcgcgcggtcgcgcagcatgtcgcgggtgcgttgcccgatcgcttcaccgcgacgatg
ggcccgaagcaccggcgcggcaagatcttcatcgactacctgcgcaacggccgcggcgcg
agcacgatcgccgcgtattcggtgcgcgcgcggcccgggctcggcgtgtcggtgccgctg
cgctgggacgaggtgcccgacacgacgggcggcgcgcaatggacgatcgacacgctgcac
gagcgcctcgatcgactgaagcgcgatccgtgggacggctatgacgacacgcgccagcga
atcaccgcacaaatgcgcgcgcggctcggcacgtcgtga
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