Bradyrhizobium arachidis: WN72_05710
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Entry
WN72_05710 CDS
T06898
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
barh
Bradyrhizobium arachidis
Pathway
barh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
barh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
WN72_05710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
barh03400
]
WN72_05710
Enzymes [BR:
barh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
WN72_05710
DNA repair and recombination proteins [BR:
barh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
WN72_05710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QOZ65954
LinkDB
All DBs
Position
1116645..1117571
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AA seq
308 aa
AA seq
DB search
MAKRTKTPAQKPAAPQMPGFIAPQLATLKMKVPSGAQWIHEVKYDGYRIQLRIDGDDRRA
YTRNGHNWVHKFSVIAGAFDVRGQAIVDGEVVVVHEERPNFSELQADLARGNQDRLVYFA
FDLLWLDGQDLRKLSQLARKELLKELIESNNIKEPTLYSEHHEGDGQALFEAASRLKYES
IISKRVDAPYRSERVEAWQKIKVVQKGKFPVVGFIKDPSGVAALYLGKQEGGELVYMGKV
GTGWGRTTSRKIRDALDSVVSPKSRLSKQLKKHKATWVEPKFVAEIEYRDITSEGLLRAS
SFKGLSRK
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaagcgtaccaagacaccggcacaaaagccggcggctcctcagatgccggggttt
attgcgccccagctcgcgaccctcaagatgaaggtgccctcgggggctcagtggattcac
gaagtcaaatacgacggctaccgcattcagcttcgcatcgacggagatgatcgtcgcgcc
tacacgcgaaacggccacaactgggtccacaaattctccgtcatcgccggcgccttcgac
gtccgaggtcaggcgatcgttgacggtgaggtcgtcgtcgtccatgaggagcgacccaat
ttctccgagctgcaggccgacctcgcgagagggaatcaggatcgcttagtttacttcgcc
ttcgatctcttgtggcttgatggccaagaccttcggaagctttcccagcttgcccgtaag
gagctgctcaaggagctaatcgagagcaataacatcaaggagcctaccctctacagcgaa
caccatgaaggtgacgggcaggcgctgttcgaggcagccagcaggctgaagtacgagagc
atcatctccaaacgagtggatgctccttaccgatcggagcgggttgaagcgtggcagaag
atcaaggttgtccagaagggcaaattccccgttgtcggttttatcaaagacccgtcaggt
gttgccgctctctacctcggcaaacaggaaggcggggagctagtttatatgggcaaggtc
ggcacgggatggggccggaccacctcgcgcaagatcagggatgcactcgatagtgtagtt
agccccaagagtagattgagtaagcaactcaagaagcacaaggcgacttgggtcgagccg
aagtttgttgccgaaatcgagtatcgcgacataacttccgaaggactgctccgcgctagc
tcattcaaaggtctaagccggaaataa
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