Bacillus velezensis FZB42: RBAM_013180
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Entry
RBAM_013180 CDS
T00582
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bay
Bacillus velezensis FZB42
Pathway
bay03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RBAM_013180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bay03400
]
RBAM_013180
Enzymes [BR:
bay01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RBAM_013180
DNA repair and recombination proteins [BR:
bay03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RBAM_013180
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DUF2532
Motif
Other DBs
NCBI-ProteinID:
ABS73681
UniProt:
A7Z3V5
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Position
complement(1279116..1280951)
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AA seq
611 aa
AA seq
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MVLTMQPILTSVPPEGSEWRYEVKYDGFRCLLRIDESGVTLTSRNGQTLTNQFPEITAFA
ARCFQHMKDRFPITLDGELVYLINPYRADFEHLQIRGRLKRTEAIESTADRRPCRFLAFD
LLVLEGAGTVSLPYVKRKRALSKLLKEANLPACPHHLAEEAIQYIPEHTDFDALWDKVVR
HDGEGIVAKRASSGWAENKRSPDWQKYKHMKTAHVLLTGFNPKNGYVTASVLKDGTAVPI
ASVSHGMQAEEKNAVRTIMETHGKKQNSGEYTLEPSICMTVQYLTILQDTLREVSFVSFQ
FEMDWTECTYQQLILHSKTLPPKLQFTSLDKIVFKKREKTKADFLSYMVKMSDFLMPFLK
DRAVTVIRYPHGAPGESFFQKNKPDYTPDFVSSVFDGSHEHIVCSSIPSLLWLANQLALE
FHVPFQTVHSERPAEIVIDLDPPSRNDFPMAVEAAHVLKQLFDSFSITSFPKLSGNKGIQ
LYIPLSPEAFTYEETRAFTMLIADYCVRTRPDLFTTERFIKNRNGRLYLDYLQHAEGKTI
IAPYSTRGNELGTVAAPLYWSEVNSSLTPDDYTIDTVVNRVRTEGDPFYDFYRNPQDGPL
SIVLEQIKRKS
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggtgctgacgatgcagccgattttgacctctgtaccgcctgaaggcagtgagtggcgc
tatgaggtaaagtatgacggattccgctgtcttctccgcatagacgaaagcggcgttaca
ttaaccagcagaaacggacagacgctgacgaatcaatttccggaaatcacggcttttgcg
gcccggtgttttcagcacatgaaagacaggttccccattacgcttgacggagagcttgtc
tatttaatcaatccgtacagagcggactttgagcatcttcaaatccgcggacgtttaaaa
cggacggaagcaattgaaagcaccgctgatagacggccgtgccgctttctggcatttgat
ctcctcgttctggaaggcgccggcaccgtctcattaccgtatgtgaaacggaaacgcgcc
ctttccaaactgcttaaagaagcaaatcttcccgcctgccctcatcacttagcggaagaa
gcgattcaatacattccggaacacactgactttgatgcgctttgggacaaggtcgtccgc
catgacggagaaggtatcgtagcaaaaagggcttccagcggctgggcggaaaataaacgc
tctcccgactggcaaaagtataaacatatgaaaacggcacatgtgctattaaccgggttt
aatccgaagaacgggtatgtaacggcctctgttttaaaagacggcaccgccgtcccgatc
gcttccgtttcccacggcatgcaggcggaagaaaaaaacgccgtcagaaccattatggag
acccacggaaaaaaacaaaacagcggcgagtatacacttgagccttctatctgcatgacc
gttcagtatttaaccatattgcaggacacgctgcgtgaagtatcttttgtgtcttttcag
tttgaaatggattggacggaatgcacgtatcagcagcttatccttcactctaaaacgctg
ccgccgaagctgcagttcacaagcctggataagattgtttttaaaaaacgtgaaaaaacg
aaagcagatttcctcagttatatggtgaaaatgagcgattttcttatgccctttcttaaa
gatcgggccgtcacggtgatccgttatccgcacggcgcgcctggcgaatctttttttcaa
aaaaacaaaccggactacacgccggactttgtctcaagcgtgtttgacgggagccatgag
cacatcgtatgcagcagcataccgtcacttttatggctggctaatcagctggcgcttgaa
tttcacgttccgtttcagacagtgcattctgaaaggcccgcagaaatcgtcattgatctt
gatcctccgtcaaggaatgattttcctatggcagtggaggctgcgcatgtgctgaaacag
ctgtttgactcattcagcattacgtcattcccgaagctctccggaaataaaggcattcag
ctctacatcccgctttcaccggaagcattcacctatgaagaaacccgtgcgttcacaatg
ctcatcgccgattattgcgtcaggacgcggccggatctttttacgacagagcggtttatc
aaaaaccgaaacggcaggctctacctagattatttgcagcatgccgaagggaaaaccatt
atcgccccctattcgacccggggcaacgaattgggaacggttgcggctcccctttattgg
agcgaagtcaactcctctttaacacccgatgattatacgatcgatacagtagtgaaccgc
gtcaggacagagggagatccgttttatgatttttacaggaatccgcaggacggcccgctt
tcaatcgtgcttgagcaaatcaagagaaagagctga
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