KEGG   Bacillus amyloliquefaciens TA208: BAMTA208_10445
Entry
BAMTA208_10445    CDS       T01824                                 
Symbol
ykoU
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
baz  Bacillus amyloliquefaciens TA208
Pathway
baz03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:baz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BAMTA208_10445 (ykoU)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:baz03400]
    BAMTA208_10445 (ykoU)
Enzymes [BR:baz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BAMTA208_10445 (ykoU)
DNA repair and recombination proteins [BR:baz03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BAMTA208_10445 (ykoU)
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M RNA_ligase
Other DBs
NCBI-ProteinID: AEB24256
LinkDB
Position
2059690..2061525
AA seq 611 aa
MVLTMQPILTSAPPTGSEWRYEVKYDGFRCLLRIDESGVTLTSRNGQTLTNQFPEITAFA
VLCFQHMKDRFPITLDGELVYLVNPYRADFEHIQIRGRLKRAEAIENIANKRPCRFLAFD
LLVLKGAATVSLPYVKRKHALFKLFEEANLPLSPRHLAEEAIQYIPEHTDFEALWDKVVR
YDGEGIVAKRVSSGWAENKRSPDWQKYKHMKTAHVLLTGFNPKNGYVTASVLKDGTAVPV
ASVSHGMQAEEKNAVRTIMETHGKKLKNGEYSLEPSICMTVQYLTILQDTLREVSFVSFQ
FGMDWTECTYQQLILRSKTLPPELQFTSLDKVVFKKREKTKEDFLCYMVKMSDVLLPFLK
DRAVTVIRYPHGAPGESFFQKNKPDYTPDFVSSVFDGSHEHIVCNSIPSLLWLANQLALE
FHVPFQTVHSKRPAEIVIDLDPPSRNDFPMAVEAAHVLKELFDSFSITSFPKLSGNKGIQ
LYIPLSPEAFTYEETRAFTMLIADYCVRTRPDLFTTERFIKNRNGRLYLDYLQHAEGKTI
IAPYSTRGNELGTVAAPLYWNEVNSSLTPDDYTIDTVVNRVRTEGDPFYEFYRNPQDGPL
SIVLEQIKRKS
NT seq 1836 nt   +upstreamnt  +downstreamnt
atggtgctgacgatgcagccgattctgacctctgcaccgcccacaggcagtgagtggcgc
tatgaggtaaagtatgacggattccgctgtcttctccgcatagacgaaagcggtgtcaca
ttaaccagcagaaacggccagacgctgacgaatcaatttccggaaatcacagcctttgcc
gtcctgtgttttcagcacatgaaagacaggttccccattacgcttgacggtgagcttgtt
tatttagtgaatccgtacagagcggactttgagcacattcaaatccgcggacgtttaaaa
cgggcggaagccattgaaaatatcgccaataaacggccgtgccgctttctggcatttgat
ctcttggttctgaaaggcgccgcgacagtctcattgccctatgtgaaacggaagcacgcc
cttttcaaactgtttgaagaagcaaatcttcctttaagcccccgtcacttagcggaagaa
gcgattcaatacattccggagcacactgactttgaagcgctctgggacaaggtcgtccgg
tatgacggagaaggcatagtagcaaaaagggtatcgagcggctgggcggaaaataaacgg
tctcccgactggcagaagtacaaacatatgaaaacggcacatgtgctgttaaccggattc
aatccgaaaaacgggtatgtgacggcctcggttttaaaagacggcaccgccgttcctgtc
gcatccgtttcccacggcatgcaggctgaggaaaaaaacgccgtcagaaccattatggag
acccacggaaaaaaactgaaaaacggcgagtattcactagagccctccatctgcatgacc
gtgcaatatttaaccatattgcaggacaccctgcgcgaagtatcttttgtttcctttcag
tttgggatggattggactgaatgcacttatcagcagctaatcctccgatctaaaacgctg
ccaccagagctgcagttcacaagcctggataaggtcgtttttaagaagcgtgaaaaaacg
aaagaagatttcctttgttatatggtgaagatgagcgatgttcttttgccctttcttaaa
gaccgggctgtcacagtaatccgatatccacacggggcgccgggcgagtctttttttcaa
aaaaacaagccggactacacgccggactttgtctcaagcgtgtttgacggaagccatgag
cacatcgtgtgcaacagcataccgtctcttttatggctggccaatcagctggcgctggaa
tttcacgttccttttcagacagtccattctaaaaggcccgcagaaatcgtcattgacctt
gatccgccgtcaaggaatgatttccctatggctgtggaggcggcgcatgtgctgaaagag
ctgtttgactcattcagcattacatcatttccgaagctttccggaaataaaggcattcag
ctctacatcccgctttcaccggaagcattcacctacgaagagacccgcgcgttcacaatg
ctcattgctgattattgcgtccggacgcgcccggatctatttacgacagagcggtttatc
aaaaaccgaaacggcaggctctaccttgattatttgcagcatgctgaaggaaaaacgatt
atcgccccctattcgacccggggcaacgaattgggaacggttgccgcccccctttattgg
aacgaagtcaattcctctttaacacctgatgattatacgattgatacagtcgtgaatcgc
gtcagaacagagggagatccgttttatgagttttaccgcaatccgcaggacggcccgctt
tcaatcgtgcttgagcaaatcaagagaaagagctga

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