Brevibacillus brevis: BBR47_36460
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Entry
BBR47_36460 CDS
T00879
Symbol
ligB
Name
(GenBank) putative ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bbe
Brevibacillus brevis
Pathway
bbe03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bbe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BBR47_36460 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbe03400
]
BBR47_36460 (ligB)
Enzymes [BR:
bbe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BBR47_36460 (ligB)
DNA repair and recombination proteins [BR:
bbe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BBR47_36460 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
BAH44623
UniProt:
C0ZFR4
LinkDB
All DBs
Position
complement(3825278..3826213)
Genome browser
AA seq
311 aa
AA seq
DB search
MNPIIPMEPISCEVIPQGDDWIAQVKWDGVRILTYFDGQRTHLYNRRINERTHQYPELAD
IQTYCKARSVILDGEVIALGADGKPSFHEVMRRDGIRRLEKVSQAQKAVPITYMIFDVLF
TNNEWVIDLTLRERLNLLSEIIIPNDHVQLVEGHDDGNAMYEVIKQHGMEGIVMKNLNSK
YVIGGKEKQWQKKKYYRDTIAVVGGVTLRDNVVNSLLLGLYDPQGRLFYIGHAGTGKLTR
NDWVTLTEKIVPLIQNDRPFANTPARFKGAVWLRPSVTVKVQFAEWTEGYTLRQPSIQAV
VDIPVDYCVLE
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgaatccaattatacctatggagccaattagctgtgaggtaataccccagggggacgac
tggatcgcccaagttaaatgggatggagttcgaatcctaacttactttgatggtcaaagg
actcatttatacaatcggagaataaatgagcggactcaccaatacccagagttagctgac
atacagacatattgtaaggctcgctcggtgatcttagatggagaagtgattgcactagga
gctgacggaaaaccgtcctttcatgaagtgatgcgtcgggatgggattagacgattggag
aaagtcagccaggcacagaaggctgtccccattacctacatgatatttgatgtcctattt
acaaataatgagtgggtaatcgatcttacattgagagagcgtctcaacttattatcagaa
atcattattcccaacgaccatgtacaattagttgaaggtcatgatgatggaaacgctatg
tatgaggtcatcaaacagcatggtatggaaggcattgttatgaagaatctaaacagtaaa
tacgtcattggtgggaaagagaaacagtggcaaaagaaaaaatactatcgtgacaccata
gctgtagtcgggggagttacgctgcgtgataacgttgtgaattctctcttgttagggctg
tatgatccccaagggcgcttattttatataggccacgcaggaacaggtaaattaactcga
aatgactgggtgactctgacggaaaagattgtacctttgatacaaaatgataggcccttt
gcaaataccccagcaaggttcaagggtgctgtgtggctgagaccaagtgtcacggttaag
gtacaatttgcggagtggacagaaggctatacgttacggcaaccgagtattcaagcagtt
gttgatatacctgttgattactgtgtcttggagtag
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