KEGG   Berkelbacteria bacterium GW2011_GWE1_39_12: UT28_C0001G0605Help
Entry
UT28_C0001G0605   CDS       T03992                                 

Definition
(GenBank) hypothetical protein
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bbgw  Berkelbacteria bacterium GW2011_GWE1_39_12
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bbgw00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    UT28_C0001G0605
Enzymes [BR:bbgw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     UT28_C0001G0605
DNA repair and recombination proteins [BR:bbgw03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     UT28_C0001G0605
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
complement(555859..557361)
Genome map
AA seq 500 aa AA seqDB search
MALGKYRTKRRFKKTPEPFGKLTGSSDSNFVIQKHNASHLHYDFRLQMEGVLKSWAIPKK
PTLDPKIKRLAVQVEDHPLEYINFEGVIPEGNYGAGTVEIWDKGKYKFLDNKNLESGHLT
FLLKGKKLKGEFALVKIQKIKGENYWLFIKANDEFSREKKFSEEPVKNEKEVFWLKGGKL
DLSSLPPKDIKMAKPMMTTLVHEPFDSPDWLYEIKWDGYRALALIKNGSVELISRNQLSL
NKRFPELVSSLKKLSIDCILDGEITVLNDKGYPDFHLIQDYSKTKEGNLIYYVFDVLNIS
GKNCEVLPLTKRKQILDEILTDLPYLKKSEFIEKEGKRFFEIAKINNIEGIIAKKKDSLY
HEGVRSKDWLKIKALTQQEVVVGGFTKPKNGRKYFGSLLVGIFEKDKFRFIGGVGTGFTE
KDLEMFYSKLRQKIIKDSPFGNFNRLPNSTWVAPDIVIEIRYQELTKDKMLRQAVFLGLR
EDKNPNEVTFEDAEINKSKF
NT seq 1503 nt NT seq  +upstreamnt  +downstreamnt
gtggccttaggaaaatatcgaacaaaaaggcgattcaaaaaaacaccggagcccttcgga
aaattgacgggtagttccgattcaaattttgtaattcaaaagcacaacgcatcgcatctt
cattatgattttagattgcaaatggaaggcgttttaaaaagctgggcaattccaaaaaaa
ccgacattagatccaaaaataaaaagattggctgttcaagtcgaagaccatcctttagaa
tatataaatttcgaaggagtgattcccgagggtaactatggcgctggtacggtagaaatt
tgggacaaaggtaaatataagtttttagataataaaaatttagaaagcggccacctgact
tttttgctgaaaggaaaaaaacttaaaggcgagtttgctttggtaaaaatacaaaaaatt
aaaggggaaaattattggctatttataaaagctaatgatgaattttcgagggaaaaaaaa
tttagtgaagagccagttaaaaacgaaaaagaagtattttggcttaaaggcggaaagtta
gatctaagttcacttccaccaaaagatattaaaatggccaaaccaatgatgactacttta
gtgcacgaaccttttgatagtccagactggctttatgaaattaagtgggacggctatcga
gcattagcgctaattaaaaatggctcagttgaattaatctcaagaaatcaattatcttta
aataaaagatttcccgaattagtttcatcgcttaaaaaattgagcattgattgtatactc
gatggagaaattacggttctaaatgataagggatacccagattttcatttaattcaagat
tattcaaaaactaaagagggtaatttaatatactatgtttttgacgttttgaatatttct
gggaagaattgcgaagtattgcccttaactaaaaggaaacaaatcctcgacgaaatactt
accgatcttccgtatttaaagaaatctgaatttatcgaaaaagagggaaaaagatttttc
gaaatagcaaaaataaacaacatcgaaggaattatcgctaagaaaaaggatagcttatat
cacgaaggagttcgatcaaaagattggctaaagattaaagccttaacccagcaagaagtt
gtggttggtggctttacaaagcccaaaaatggcagaaaatacttcggatcattattagta
ggaatttttgaaaaagataagtttaggtttatcggtggagttgggaccggttttacagaa
aaagatcttgaaatgttctactcaaaactaagacaaaaaattattaaggattcccctttt
ggaaattttaatcggcttccgaattcaacatgggttgctccggatatagtcattgagatt
aggtaccaagaactgacaaaagataaaatgttgagacaagccgtcttcttaggtttaaga
gaagacaaaaatcctaatgaggtaactttcgaagatgccgaaattaataaatcaaaattc
tga

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