Berkelbacteria bacterium GW2011_GWE1_39_12: UT28_C0001G0605
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Entry
UT28_C0001G0605 CDS
T03992
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bbgw
Berkelbacteria bacterium GW2011_GWE1_39_12
Pathway
bbgw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bbgw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
UT28_C0001G0605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbgw03400
]
UT28_C0001G0605
Enzymes [BR:
bbgw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
UT28_C0001G0605
DNA repair and recombination proteins [BR:
bbgw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
UT28_C0001G0605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AKM82406
UniProt:
A0A0G4B381
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All DBs
Position
complement(555859..557361)
Genome browser
AA seq
500 aa
AA seq
DB search
MALGKYRTKRRFKKTPEPFGKLTGSSDSNFVIQKHNASHLHYDFRLQMEGVLKSWAIPKK
PTLDPKIKRLAVQVEDHPLEYINFEGVIPEGNYGAGTVEIWDKGKYKFLDNKNLESGHLT
FLLKGKKLKGEFALVKIQKIKGENYWLFIKANDEFSREKKFSEEPVKNEKEVFWLKGGKL
DLSSLPPKDIKMAKPMMTTLVHEPFDSPDWLYEIKWDGYRALALIKNGSVELISRNQLSL
NKRFPELVSSLKKLSIDCILDGEITVLNDKGYPDFHLIQDYSKTKEGNLIYYVFDVLNIS
GKNCEVLPLTKRKQILDEILTDLPYLKKSEFIEKEGKRFFEIAKINNIEGIIAKKKDSLY
HEGVRSKDWLKIKALTQQEVVVGGFTKPKNGRKYFGSLLVGIFEKDKFRFIGGVGTGFTE
KDLEMFYSKLRQKIIKDSPFGNFNRLPNSTWVAPDIVIEIRYQELTKDKMLRQAVFLGLR
EDKNPNEVTFEDAEINKSKF
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
gtggccttaggaaaatatcgaacaaaaaggcgattcaaaaaaacaccggagcccttcgga
aaattgacgggtagttccgattcaaattttgtaattcaaaagcacaacgcatcgcatctt
cattatgattttagattgcaaatggaaggcgttttaaaaagctgggcaattccaaaaaaa
ccgacattagatccaaaaataaaaagattggctgttcaagtcgaagaccatcctttagaa
tatataaatttcgaaggagtgattcccgagggtaactatggcgctggtacggtagaaatt
tgggacaaaggtaaatataagtttttagataataaaaatttagaaagcggccacctgact
tttttgctgaaaggaaaaaaacttaaaggcgagtttgctttggtaaaaatacaaaaaatt
aaaggggaaaattattggctatttataaaagctaatgatgaattttcgagggaaaaaaaa
tttagtgaagagccagttaaaaacgaaaaagaagtattttggcttaaaggcggaaagtta
gatctaagttcacttccaccaaaagatattaaaatggccaaaccaatgatgactacttta
gtgcacgaaccttttgatagtccagactggctttatgaaattaagtgggacggctatcga
gcattagcgctaattaaaaatggctcagttgaattaatctcaagaaatcaattatcttta
aataaaagatttcccgaattagtttcatcgcttaaaaaattgagcattgattgtatactc
gatggagaaattacggttctaaatgataagggatacccagattttcatttaattcaagat
tattcaaaaactaaagagggtaatttaatatactatgtttttgacgttttgaatatttct
gggaagaattgcgaagtattgcccttaactaaaaggaaacaaatcctcgacgaaatactt
accgatcttccgtatttaaagaaatctgaatttatcgaaaaagagggaaaaagatttttc
gaaatagcaaaaataaacaacatcgaaggaattatcgctaagaaaaaggatagcttatat
cacgaaggagttcgatcaaaagattggctaaagattaaagccttaacccagcaagaagtt
gtggttggtggctttacaaagcccaaaaatggcagaaaatacttcggatcattattagta
ggaatttttgaaaaagataagtttaggtttatcggtggagttgggaccggttttacagaa
aaagatcttgaaatgttctactcaaaactaagacaaaaaattattaaggattcccctttt
ggaaattttaatcggcttccgaattcaacatgggttgctccggatatagtcattgagatt
aggtaccaagaactgacaaaagataaaatgttgagacaagccgtcttcttaggtttaaga
gaagacaaaaatcctaatgaggtaactttcgaagatgccgaaattaataaatcaaaattc
tga
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