Bordetella bronchiseptica 253: BN112_0647
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Entry
BN112_0647 CDS
T02344
Name
(GenBank) Putative ATP-dependent DNA-ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bbh
Bordetella bronchiseptica 253
Pathway
bbh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bbh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BN112_0647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbh03400
]
BN112_0647
Enzymes [BR:
bbh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BN112_0647
DNA repair and recombination proteins [BR:
bbh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BN112_0647
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
CCJ52565
UniProt:
A0A0C6P035
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All DBs
Position
662468..664930
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AA seq
820 aa
AA seq
DB search
MTQPLRQYREKRDFRATAEPAGAARRPRAAARASEGLSFVIQRHQARRLHYDFRLEIDGV
LVSWAVPKGPSRDPSVKRLAVHVEDHPLEYGGFSGDIPKGQYGAGHVDIWDSGVWIPRGD
PRQGLRRGKLHFALRGRRLAGDWVLVRMSGEQDQWLLRKEDDEAAVPGDDAERAPPAPEP
APEHAPAATPRGRRAAMPRTLAPQLATLVDSPPHGPGWSYEVKYDGYRILAACSAGGVRL
VSRGNEDWQARMAPLARALGALKLGRGWLDGEVVVLDERGVADFQLLQNALDGQAEGLVF
VAFDLPFWNGEDLRALPLQARQERLEDLLREVPEDAPLMLTQRLPVADDTEGKAAWNEAC
RLSLEGLICKRLDAPYRSGRSQGWLKLKCRPRQEFVIGGYTEPAGARRHLGALLVGLRQG
RQLRYAGRVGTGFGAATLRTLGQRLAALRQDAKPFSGDVPRGRGDAAIHWVSPELVAEVN
YAGITRDGLLRQASFAGLRADKPASEVRGEVAARPPATKAATPSRRAGDGRAEVAGVRIS
HPDRLAYREPDYTKLQLAEYYAAIGPHILPHLRQRRVALLRCPDGAGTTCFFQKHLSQSL
PAGVRRDGGHLVIESLPGLIALVQYGAIEFHTWGADTRHPDTPDRITLDLDPGPGVAWPA
IVEGAQMARLLMQEVGLEPFLKTTGGKGLHLVAPLRPTQPWDTVKDFARALARQLAVALP
DRFTANMAKARRERRIFVDYLRNGNGATAVAAFSARARDGAPVSMPLSWDALDAGDDLRG
ARWNIANALEQARRKPDPWADYAASRRTLGSRMQARLPRD
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgacacagccactgcggcagtaccgcgagaagcgcgatttccgcgccaccgccgaaccg
gccggcgccgcccggcgcccgcgcgcggccgcccgcgcaagcgaaggcctgtccttcgtc
atccagcgccatcaggcgcgccgcctgcattacgatttccgtctcgaaatcgacggcgtg
ctggtgagctgggcggtgcccaagggcccgtcgcgcgatccttccgtcaagcgcctggcc
gtgcatgtggaagaccatccgctcgagtatggcggattctccggcgacattcccaagggc
cagtacggcgccggacatgtcgacatctgggacagcggcgtctggatcccgcgcggcgat
ccgcgccagggcttgcggcgcggcaagctgcatttcgcgttgcgcggccggcgtcttgcc
ggcgactgggtcctggtgcgcatgagcggcgagcaggaccaatggctgctgcgcaaggaa
gacgacgaggcggcggtgccgggcgatgacgccgaacgcgcgccgcccgccccggagccc
gccccggagcacgccccggcggccacgccgcgcgggcgccgcgccgcgatgccgcgcacg
ttggcgccccagctggccacgctggtggacagcccgccgcatgggccgggctggtcgtac
gaggtcaagtacgacggctaccgcatcctggcggcctgctcggccggcggcgtgcgcctg
gtcagccgcggcaacgaggattggcaggctcgcatggcgccgctggcgcgcgcgctgggc
gcgctgaagctggggcgcggctggctcgacggcgaggtcgtcgtgctcgacgaacgcggc
gtggccgatttccagctgttgcagaatgcgctggacggccaggccgaagggctggtgttc
gtcgcgttcgaccttcccttctggaatggcgaggacctgcgcgccctgcccctgcaagcc
aggcaagagcggctcgaggacctgctgcgggaggtgcccgaggacgcgccgctgatgctc
acgcaacgcctgccggtggccgacgacaccgaaggcaaggcggcctggaacgaagcctgc
cggctgagcctggaaggcctgatctgcaagcgcctggacgcgccttaccggtccggccgc
tcgcagggctggctgaagctgaagtgccgcccgcgccaggaattcgtcatcggcggctat
accgaaccggccggcgcgcgccgccacctgggcgccttgctggtgggcctgcgccaaggc
cgccaattgcgctatgcgggccgcgtggggacgggcttcggcgcggccacgttgcgcacg
ctgggccagcggctggcggcgctgcgccaggatgccaagccgttttcgggcgacgtgccg
cgcggccgcggcgacgccgccatacattgggtcagccccgagctggtggccgaagtgaat
tatgcgggcatcacgcgcgacggcctgctgcgccaggcttcgtttgccggcctgcgcgcc
gacaagcccgccagcgaagtgcgcggcgaggtggccgcgcggccgccggcgaccaaggcc
gccacgccgtcgcgccgcgccggcgatggccgcgccgaggtggccggcgtgcgtatctcg
catccggaccggctggcctatcgcgagcccgactacaccaagttgcagctggccgagtac
tacgcggccatcggcccgcatatcctgccgcacctgcgccagcgccgcgtggccctgttg
cgctgtcccgacggcgccggcacgacctgcttcttccagaagcacctgagccagtcgctg
cctgccggcgtgcggcgcgacggcgggcacctggtgatcgaatcgctgcccggcctgatc
gcgctggtgcagtatggcgccatcgagttccatacctggggcgccgatacccgccatccc
gacacgcccgaccggatcaccctggacctggaccccggccccggcgtggcgtggccggcc
attgtcgaaggcgcgcagatggcccgcctgctgatgcaggaagtcgggctggaaccgttt
ctcaagacgaccggcggcaagggcctgcacctggtggcgccgctgcggcccacgcagccc
tgggacacggtcaaggatttcgcgcgcgcgctggcgcgccagctggccgtggccctgccc
gaccggttcaccgccaacatggccaaggcccggcgcgaacggcgcatcttcgtggactac
ctgcgcaacggcaacggcgccaccgcggtggccgcgttctcggcgcgggcgcgcgacggc
gcgcccgtttccatgccgctgtcctgggacgcgctggacgccggcgacgatttgcgcggc
gcgcgctggaacatcgccaacgcgctggagcaggcccggcgcaagcccgacccctgggcc
gattatgccgccagccggcgcacgctgggttcgcgcatgcaggcgcggctgccgcgcgat
tga
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