Bordetella bronchiseptica RB50: BB2845
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Entry
BB2845 CDS
T00141
Name
(GenBank) Putative ATP-dependent DNA-ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bbr
Bordetella bronchiseptica RB50
Pathway
bbr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BB2845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbr03400
]
BB2845
Enzymes [BR:
bbr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BB2845
DNA repair and recombination proteins [BR:
bbr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BB2845
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
CAE33337
UniProt:
A0A0H3LN90
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All DBs
Position
3008333..3010795
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AA seq
820 aa
AA seq
DB search
MTQPLRQYREKRDFRATAEPAGAARRPRAAARASEGLSFVIQRHQARRLHYDFRLEIDGV
LVSWAVPKGPSRDPSVKRLAVHVEDHPLEYGGFSGDIPKGQYGAGHVDIWDSGVWIPRGD
PRQGLRRGKLHFALRGRRLAGDWVLVRMSGEQDQWLLRKEDDEAAVPGDDAERAPATPPP
APEHAPAATPRGRRAAMPHTLAPQLATLVDSPPHGPGWSYEVKYDGYRILAACSAGGVRL
VSRGNEDWQARMAPLARALGALKLGRGWLDGEVVVLDERGVADFQLLQNALDGQAEGLVF
VAFDLPFWNGEDLRALPLQARQERLEDLLREVPEDAPLMLTQRLPVADDTEGKAAWNEAC
RLSLEGLICKRLDAPYRSGRSQGWLKLKCRPRQEFVIGGYTEPAGARRHLGALLVGLRQG
RQLRYAGRVGTGFGAATLRTLGQRLAALRQDAKPFSGDVPRGRGDAAIHWVSPELVAEVN
YAGITRDGLLRQASFAGLRADKPASEVRGEVAARPPAAKAATPSRRAGDGRAEVAGVRIS
HPDRLAYREPDYTKLQLAEYYAAIGPHILPHLRQRRVALLRCPDGAGTTCFFQKHLSQSL
PAGVRRDGGHLVIESLPGLIALVQYGAIEFHTWGADTRHPDTPDRITLDLDPGPGVAWPA
IVEGAQMARLLMQEVGLEPFLKTTGGKGLHLVAPLRPTQPWDTVKDFARALARQLAVALP
DRFTANMAKARRERRIFVDYLRNGNGATAVAAFSARARDGAPVSMPLSWDALDAGDDLRG
ARWNIANALEQARRKPDPWADYAASRRTLGSRMQARLPRD
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgacacagccactgcggcagtaccgcgagaagcgcgatttccgcgccaccgccgaaccg
gccggcgccgcccggcgcccgcgcgcggccgcccgcgcaagcgaaggcctgtccttcgtc
atccagcgccatcaggcgcgccgcctgcattacgatttccgtctcgaaatcgacggcgtg
ctggtgagctgggcggtgcccaagggcccgtcgcgcgatccttccgtcaagcgcctggcc
gtgcatgtggaagaccatccgctcgagtatggcggattctccggcgacattcccaagggc
cagtacggcgccggacatgtcgacatctgggacagcggcgtctggatcccgcgcggcgat
ccgcgccagggcttgcggcgcggcaagctgcatttcgcgttgcgcggccggcgtcttgcc
ggcgactgggtcctggtgcgcatgagcggcgagcaggaccaatggctgctgcgcaaggaa
gacgacgaggcggcggtgccgggcgatgacgccgaacgcgcgccggccaccccgccgccc
gccccggagcacgccccggcggccacgccgcgcgggcgccgcgccgcgatgccgcacacg
ttggcgccccagctggccacgctggtggacagcccgccgcatgggccgggctggtcgtat
gaggtcaagtacgacggctaccgcatcctggcggcctgctcggccggcggcgtgcgcctg
gtcagccgcggcaacgaggattggcaggctcgcatggcgccgctggcgcgcgcgctgggc
gcgctgaagctggggcgcggctggctcgacggcgaggtcgtcgtgctcgacgaacgcggc
gtggccgatttccagctgttgcagaatgcgctggacggccaggccgaagggctggtgttc
gtcgcgttcgaccttcccttctggaatggcgaggacctgcgcgccctgcccctgcaagcc
aggcaagagcggctcgaggacctgctgcgggaggtgcccgaggacgcgccgctgatgctc
acgcaacgcctgccggtggccgacgacaccgaaggcaaggcggcctggaacgaagcctgc
cggctgagcctggaaggcctgatctgcaagcgcctggacgcgccttaccggtccggccgc
tcgcagggctggctgaagctgaagtgccgcccgcgccaggaattcgtcatcggcggctat
accgaaccggccggcgcgcgccgccacctgggcgccttgctggtgggcctgcgccaaggc
cgccaattgcgctatgcgggccgcgtggggacgggcttcggcgcggccacgctgcgcacg
ctgggccagcggctggcggcgctgcgccaggatgccaagccgttttcgggcgacgtgccg
cgcggccgcggcgacgccgccatacattgggtcagccccgagctggtggccgaagtgaat
tatgcgggcatcacgcgcgacggcctgctgcgccaggcttcgtttgccggcctgcgcgcc
gacaagcccgccagcgaagtgcgcggcgaggtggccgcgcggccgccggcggccaaggcc
gccacgccgtcgcgccgcgccggcgatggccgcgccgaggtggccggcgtgcgcatctcg
catccggaccggctggcctatcgcgagcccgactacaccaagttgcagctggccgagtac
tacgcggccatcggcccgcatatcctgccgcacctgcgccagcgccgcgtggccctgttg
cgctgtcccgacggcgccggcacgacctgcttcttccagaagcacctgagccagtcgctg
cctgccggcgtgcggcgcgacggcgggcacctggtgatcgaatcgctgcccggcctgatc
gcgctggtgcagtatggcgccatcgagttccatacctggggcgccgatacccgccatccc
gacacgcccgaccggatcaccctggacctggaccccggccccggcgtggcgtggccggcc
attgtcgaaggcgcgcagatggcccgcctgctgatgcaggaagtcgggctggaacctttt
ctcaagacgaccggcggcaagggcctgcacctggtggcgccgctgcggcccacgcagccc
tgggacacggtcaaggatttcgcgcgcgcgctggcgcgccagctggccgtggccctgccc
gaccggttcaccgccaacatggccaaggcccggcgcgaacggcgcatcttcgtggactac
ctgcgcaacggcaacggcgccaccgcggtggccgcgttctcggcgcgggcgcgcgacggc
gcgcccgtttccatgccgctgtcctgggacgcgctggacgccggcgacgatttgcgcggc
gcgcgctggaacatcgccaacgcgctggagcaggcccggcgcaagcccgacccctgggcc
gattatgccgccagccggcgcacgctgggttcgcgcatgcaggcgcggctgccgcgcgat
tga
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