Bordetella bronchialis: BAU06_06860
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Entry
BAU06_06860 CDS
T04591
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bbro
Bordetella bronchialis
Pathway
bbro03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bbro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BAU06_06860 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbro03400
]
BAU06_06860 (ligD)
Enzymes [BR:
bbro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BAU06_06860 (ligD)
DNA repair and recombination proteins [BR:
bbro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BAU06_06860 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ANN66049
LinkDB
All DBs
Position
complement(1543132..1545786)
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AA seq
884 aa
AA seq
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MVDTLAKYRQKRNFDITSEPAGGGKANAAARAFVIQKHWATRLHYDFRLELDGAMKSWAV
PKGPSYDPSIKRMAVQVEDHPIAYNQFEGEIPKGQYGAGKVIIWDEGTWQPVGDPRKGYR
EGHLKFDLMGAKMQGRWALVRLHGKENERQPPWLLIKDRDEFARPDSEFSVVDEMPDSVV
PLRAQRRKAIARASASGGPAQGKAAKKTAGKTAKATKATKAAARAADEFTADPADDGAGG
RKLPGVARALPATLKPQLATLVDGVPPNTADWVYEVKFDGYRIVARLDEDGARLYTRNGH
DWSAKMPHLAKALAGLKVPGTWIDGEIVVLADNGAPSFQALQNAFEGERTANIVYYAFDL
PYVAGRDLREEPLTVRRALLEQLLDGASDGPVRFSAAFDVPPKDLVASACRMGLEGIIAK
RKDAVYVSRRTDTWVKIKCAQRQEFVIIGYTDPRGSRTGFGALLVAVHDDKGGLRYAGKV
GTGFDTRGLAELAKKLQALEVKERPLPHQAEMPRQAHWIRPELVAEVSFGEWTGGGHIRH
SVFRGLRADKPARAITREEAVPAEAVADDDHDGKDETPPPKAAAKKTRAGKEKPGRLSNP
DRVIDPSTGLTKLDLARYYGLVAPLLLTHLKGRPVSLVRAPGGIHEPLFFQKHLEAAMPG
VKPLPEKLDPGHPSLLEVPSDVAIMSAAQMNVVEFHTWNAVKTAIDKPDRMLFDLDPGEG
VKWATLQQAAGLVRVLLRELGLDCWLKTSGGKGLHVVVPLRKQYGWDPVKDFSQAVVRHL
ARTLPQIFVAKSGPKNRVGKIFADYLRNGFGATTVSAWSARARPGLGISVPIAWDELPEI
KSGAQWTIASVHSRLDAGNEPWADYRAQSLGPAMKALDFEPGRR
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atggtcgacacccttgccaagtaccgccagaagcgcaacttcgatatcacgtccgaaccc
gcgggcggcggcaaagcgaacgcggcggcgcgcgccttcgtcatccagaagcactgggcg
acgcgcctgcactacgatttccggctcgaactggatggcgcgatgaaaagctgggccgtg
cccaagggccccagctacgacccatccatcaagcgcatggccgtccaggtggaagaccat
cccatcgcctacaaccagttcgaaggcgaaatacccaagggccagtatggcgccggcaag
gtcatcatctgggacgaaggcacgtggcagccggtgggcgacccgcgcaagggctatcgc
gaagggcatctgaaattcgacctgatgggcgccaagatgcagggccgctgggcgctggtg
cggctgcacggcaaggaaaacgaaaggcagcccccctggctgttgatcaaggatcgcgac
gaattcgcgcggcccgacagcgagttcagcgtggtcgacgaaatgcccgacagcgtggtg
ccgctgcgcgcgcaacgcaggaaggcgatcgcgcgggcgtcggccagcgggggaccggcg
cagggaaaggcggcgaagaagacggccggcaagaccgccaaggcgacgaaagcgacgaag
gccgcggcaagggccgcggatgaatttaccgccgatccggccgacgacggcgccgggggg
cggaaactgcccggggtggcccgcgcgctgcccgccaccctgaaaccccagcttgccacg
ctggtggacggcgtgccgccgaacacggcggactgggtctacgaggtgaagttcgacggc
taccgcatcgtggcccgcctggacgaagacggcgcgcggctctacacccgcaacggccac
gactggagcgcgaagatgccgcacctggccaaggcgctggccggactcaaggtgccgggc
acgtggatagacggcgagatcgtcgtcctggccgataacggcgcacccagtttccaggcc
ctgcagaacgccttcgagggcgagcgcaccgccaatatcgtttactacgccttcgatctt
ccctacgtcgccggccgcgatttgcgcgaagaaccgcttaccgtgcggcgcgccctgctg
gagcaactgctggacggggcttccgacggcccggtgcgcttcagcgccgccttcgacgta
ccgcccaaggacctggtggcgtcggcgtgcaggatgggcctggaaggcatcatcgccaag
cgcaaggacgccgtctatgtgtcccggcgcaccgatacctgggtcaagatcaaatgcgcc
cagcggcaggagttcgtgattatcggctacaccgatccgcgcggcagccgcaccggtttc
ggcgcgctgctggtcgcggtccatgacgacaagggcggcctgcgctacgccggcaaggtc
ggcacgggcttcgacacgcgcgggctggccgaactggcgaagaagctgcaggcgctggag
gtcaaggaacggccgctgccgcaccaggccgagatgccgcgccaggcgcactggatccgc
ccggaactggtcgccgaagtgtccttcggcgaatggacgggtggtgggcatatccgtcat
tcggttttccggggcttgcgggccgacaagccggcgcgcgcgatcacccgcgaggaagcc
gtccccgccgaggcggtcgccgacgacgaccatgacggcaaggacgagacgcccccgccc
aaagccgccgcgaagaaaacccgggcaggaaaagaaaagccgggccggctgtccaatccc
gaccgggtcatcgatccctccacgggcctgaccaagctggacctggcgcgctattacggg
ctggtggcgccgctgctgctgacgcacctgaaaggcaggccggtctcgctggtgcgcgcg
ccgggcggcatccacgagccgctgttcttccagaagcacctggaagcggccatgccgggc
gtcaagcccttgccggaaaaactggacccgggccatccctctttgctggaagtaccgtcg
gacgtggccatcatgtcggcggcgcagatgaacgtggtggaattccacacctggaacgcc
gtcaagaccgcgatagacaagcccgaccgcatgctgttcgacctggatcccggggaaggc
gtgaaatgggccacgctgcagcaggccgccgggctggtacgcgtgctgctgcgggagctc
ggcctggactgctggctgaagaccagcggcggcaaggggctgcacgtggtcgtgccgctg
cgcaagcagtacggctgggacccggtgaaggatttttcgcaggccgtcgtgcggcatctg
gcgcgcaccctgccccagatcttcgtggcgaagagcggtcccaagaaccgcgtgggcaag
atcttcgcggactacctgcgcaacggcttcggcgccaccaccgtatcggcctggtcggcg
cgcgcgcgtcccggactcggcatctcggtgcctatcgcctgggatgaactgccggaaatc
aagagcggcgcgcagtggaccatcgccagcgtccacagccgcctggacgcgggcaacgag
ccctgggcggattaccgcgcccaatccctggggcccgccatgaaggcgctggacttcgag
cccgggcgccggtag
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