Brettanomyces bruxellensis: BRETT_003128
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Entry
BRETT_003128 CDS
T07183
Symbol
RPD3
Name
(RefSeq) histone deacetylase
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
bbrx
Brettanomyces bruxellensis
Pathway
bbrx03082
ATP-dependent chromatin remodeling
bbrx03083
Polycomb repressive complex
bbrx04213
Longevity regulating pathway - multiple species
Brite
KEGG Orthology (KO) [BR:
bbrx00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
BRETT_003128 (RPD3)
03083 Polycomb repressive complex
BRETT_003128 (RPD3)
09150 Organismal Systems
09149 Aging
04213 Longevity regulating pathway - multiple species
BRETT_003128 (RPD3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bbrx03036
]
BRETT_003128 (RPD3)
Enzymes [BR:
bbrx01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
BRETT_003128 (RPD3)
Chromosome and associated proteins [BR:
bbrx03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
BRETT_003128 (RPD3)
HDAC complexes
Sin3A-HDAC complex
BRETT_003128 (RPD3)
BRAF-HDAC complex
BRETT_003128 (RPD3)
REST complex
BRETT_003128 (RPD3)
SHIP complex
BRETT_003128 (RPD3)
MiDAC complex
BRETT_003128 (RPD3)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
BRETT_003128 (RPD3)
Heterochromatin formation proteins
Other heterochromatin formation proteins
BRETT_003128 (RPD3)
Chromatin remodeling factors
NuRD complex
BRETT_003128 (RPD3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
64575052
NCBI-ProteinID:
XP_041139432
LinkDB
All DBs
Position
9:join(3044093..3044150,3044239..3045674)
Genome browser
AA seq
497 aa
AA seq
DB search
MLYEEKPWDPIKVNPQDKKRVAYFYDSDVGNFSYGANHPMKPHRIRMAHSLIMNYGLYKK
MEIYRAKPATREEMCQFHSDEYIDFLARATPDNLDLFNKEKFNVGDDCPVFDGLFEFCSI
SGGGSMEGAARLNRGKCDVAINYAGGLHHAKKSEASGFCYVNDIALGILELLRYHPRVLY
IDIDVHHGDGVEEAFYTTDRVMTCSFHKYGEFFPGTGELHDIGVGKGKHYAVNVPLRDGI
DDVTYRSIFEPLIKTIIEWYQPSAIVLQCGGDSLSGDRLGCFNLSMRGHANCVNYVKGFG
IPLMIVGGGGYTIRNVARTWTFETGLINQTILGPDLPFNDYYEYYGPDYKLDVRPSNMYN
ANSPEYLSRILTEIYSSLEPTKHAPSVQMQPIPADIRGFDDDTAEDSKEAMDTKGGSQKN
RDEIVVADNDYYDKAEDVHMVKNYSDHEKTNSNSLSESARDGNQVMPNSANSVGSTAVSS
GTASITQATSLSNNETK
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgttatacgaagaaaagccatgggatcccataaaggtcaatccacaggacaagaagagg
gtcgcatatttttatgattctgacgttggaaacttttcgtatggtgcaaatcatcctatg
aaacctcatcggattagaatggcacattcactgataatgaactatggattgtataagaag
atggaaatatacagggcaaagccagctactcgtgaggagatgtgtcagttccatagcgat
gagtatatagatttccttgcccgggccactccagacaacttggatcttttcaacaaggag
aagtttaacgtgggtgacgactgtccagtcttcgatggattgtttgagttttgtagtatt
tctggtggtggttctatggaaggtgccgcaagactcaatagaggaaagtgtgatgttgcc
attaattatgcaggggggttgcatcatgccaagaaatctgaggcatctggattttgctac
gttaatgatatagctctgggtatattagaactattacgatatcatccacgtgtgctatat
attgatatcgatgttcaccatggggatggcgttgaagaagctttttacactacagatcgt
gttatgacctgctcttttcacaagtacggagagttcttccctggaacgggtgagcttcat
gatattggtgttggtaaaggtaagcattatgcagtgaatgtgcctctcagggatggtatt
gatgacgtgacatatcgatcaatatttgagccattgattaaaaccattatagaatggtat
caaccttctgctattgtgcttcaatgtggtggtgattctctttctggtgatcgtttgggt
tgtttcaacttgtctatgaggggacatgctaattgtgttaactatgttaagggctttggg
atacctttaatgattgttggaggaggtggctacaccatcagaaatgttgcaagaacatgg
acttttgaaactggtttaattaatcagacaatcttgggccccgatctcccatttaacgat
tattatgagtattacggtccggactacaaacttgatgtgagaccatctaacatgtacaat
gccaactcaccagagtatctaagccgtattctaaccgaaatttactctagtcttgagcca
acaaagcatgcaccatcagttcaaatgcagcctattcccgctgatattcgaggatttgat
gatgatacagcagaggattcgaaggaggcaatggatacaaagggtgggtcacagaagaac
cgtgatgaaattgttgtggcagataatgattattacgataaagcggaggatgtgcatatg
gtgaaaaattattctgaccacgagaaaaccaattcaaacagtctttcggaatctgcgagg
gatggaaatcaggtaatgccaaatagtgccaatagtgtgggatcaacagctgtgtcttca
ggtactgccagcattactcaagcaacttctttaagcaataatgagaccaaatga
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