Bradyrhizobium sp. BTAi1: BBta_7781
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Entry
BBta_7781 CDS
T00528
Name
(GenBank) Putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bbt
Bradyrhizobium sp. BTAi1
Pathway
bbt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bbt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BBta_7781
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbt03400
]
BBta_7781
Enzymes [BR:
bbt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BBta_7781
DNA repair and recombination proteins [BR:
bbt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BBta_7781
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABQ39611
RhizoBase:
BBta_7781
UniProt:
A5ETW7
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All DBs
Position
complement(8167225..8168178)
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AA seq
317 aa
AA seq
DB search
MGASELRLRVEGHEIAVTNPAKLLFSDDHISKYELIDYYRWVAPRMLPFLRDRPIALERY
PNGIGQVGFFQKSVPSYFPDWVKTIEVEKKQGGVTRHVICNNGAVLVYLANQACITPHIW
ISRVDKLECPDQMVFDLDPSADAFDWVRAAALALNELLQELTLSAYVKSTGSRGLHVIVP
LKRTESFESVRAFARAVAMRVVMEEPSQRTLQQRTGSRHGRVFFDINRNAYAQTVAPPYA
VRARPNASLSIPLFWEEVRSKTLRPDGVTLRDIRKRLDGMIDPWADFWRRASALGSARRK
LELLGVSVRVPQKAKFR
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
gtgggcgcgagcgaattgcgattgcgtgttgaaggacacgaaatagcggttacaaacccg
gccaagttgctgttttcggacgatcatatcagcaagtacgagctcattgactattaccgg
tgggtggcaccgcggatgcttccgtttctgcgtgatcggccaattgccttggagcgatat
ccgaatggcatcggacaagttgggttttttcagaagtctgtgccctcctattttcctgac
tgggtcaaaacgattgaagttgaaaagaaacaaggaggcgtaacccgtcatgtgatctgc
aataacggggccgtgctggtgtatttggcaaatcaggcatgcatcacgccacatatatgg
atcagccgggtcgacaagctcgaatgcccagatcaaatggtgtttgacctcgacccttca
gccgatgcgttcgactgggttagggcagcggcattagctctcaatgaactccttcaagaa
ttgacgctgtcggcctatgtcaaatcgaccggttcgcgaggattgcatgtcatcgtgcct
cttaagcggactgagtcattcgagtcagtgcgcgccttcgctcgcgcggtcgcgatgcgt
gttgtcatggaggaaccaagtcagcgaactctgcagcagcgcactggctcgcggcatgga
cgcgtgttcttcgacatcaaccgcaatgcttacgcacagaccgttgcgccgccgtatgcg
gtgagagcgcggcccaacgcttcgttgtcgattccgctcttctgggaagaggtgcgctcc
aaaacattgcggccggatggcgtaactcttcgagacatacgcaaaaggctcgatggaatg
attgatccatgggctgacttttggcgccgcgcaagcgcactcgggagtgcacggcgtaaa
ttggagttgctcggtgtctctgtcagagtaccgcaaaaggcgaaatttcgctaa
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