Bubalus bubalis (water buffalo): 102391086
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Entry
102391086 CDS
T05912
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03030
DNA replication
bbub03420
Nucleotide excision repair
bbub03430
Mismatch repair
bbub03440
Homologous recombination
bbub03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
102391086 (RPA1)
03420 Nucleotide excision repair
102391086 (RPA1)
03430 Mismatch repair
102391086 (RPA1)
03440 Homologous recombination
102391086 (RPA1)
03460 Fanconi anemia pathway
102391086 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bbub03000
]
102391086 (RPA1)
03032 DNA replication proteins [BR:
bbub03032
]
102391086 (RPA1)
03400 DNA repair and recombination proteins [BR:
bbub03400
]
102391086 (RPA1)
Transcription factors [BR:
bbub03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
102391086 (RPA1)
DNA replication proteins [BR:
bbub03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
102391086 (RPA1)
DNA repair and recombination proteins [BR:
bbub03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
102391086 (RPA1)
MMR (mismatch excision repair)
102391086 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
102391086 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
Motif
Other DBs
NCBI-GeneID:
102391086
NCBI-ProteinID:
XP_006079818
EnsemblRapid:
ENSBBUG00015001296
LinkDB
All DBs
Position
3:complement(40170128..40216374)
Genome browser
AA seq
616 aa
AA seq
DB search
MVGHLSEGAIAAIMQQGDTSIKPILQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLAT
QLNPLVEEERLSSNCICQINRFIVNTLKDGRRVVILMELEVLKSAEAVGSKIGNPMPYNE
GHGQQPVVPPPVSAASPPTSRPQQQNGSPGVASTASKAFGASKTFGKAGGTSQVNSSGGT
QAKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVDESGEIRATAFNE
QADKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDGHHLPTVQF
DFTGIDDLESKSKDSLVDIIGICKNYEDVTKIIVKSNNREVSKRNIYLMDMSGKVVNATL
WGDDADKFDGSRQPVMAIKGARVSDFGGRSLSVLSSSTIIVNPDIPEAYKLRGWFDSEGQ
ALDGISISDLKSGGAGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQA
CPTQDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAIL
GQSTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVVDVKPVDYR
EYGRRLVMNIRRNAAM
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggtgggccacctgagcgagggggccattgcggccatcatgcaacagggagatacatct
ataaaacccatcctccaagtcattaacatccgtcccattactacagggaatagtccaccc
cgttatcgactgcttatgagtgatggattgaatactctatcttcgttcatgttggcaaca
cagctgaaccctcttgttgaggaagagcgattgtctagcaactgtatttgccagattaac
cgatttattgtgaacacgctgaaagatggaaggagagtggttattttgatggagttagaa
gttttgaaatcagctgaagcagttggatcaaagattggcaacccaatgccttataatgaa
ggacacggacagcagccagtagttcctcctcctgtctcagcagccagtccaccaaccagc
aggccccagcaacagaatgggagcccaggagtggcttccactgcatctaaggcttttggt
gcctcaaagacatttggaaaagctggcggtaccagccaagtgaacagctctgggggaaca
caggccaaagtggtacccattgccagcctcaccccgtaccaatccaagtggactatctgt
gctcgtgtcaccaacaaaagtcagatccgtacctggagcaactcccgaggggaagggaag
cttttctccatagaactggttgatgagagtggtgaaatcagagcgactgctttcaatgag
caagcggacaagtttttcccccttattgacgtgaacaaggtctattacttctctaaaggc
accctgaagatcgccaacaaacaattcacagccgtcaaaaacgactatgagatgaccttc
aacaatgagacttctgtcatgccctgtgaagacggtcatcacttacccacagttcagttt
gatttcacagggattgacgacctggagagcaaatctaaagactcgcttgtagacataatc
gggatctgcaagaactacgaagatgtcacaaaaatcatagtaaagtctaacaacagagaa
gtctcgaagagaaatatctatctgatggatatgtcagggaaagtggtgaacgctaccctg
tggggagacgatgctgataaatttgatggttctagacaacctgtgatggccatcaaagga
gccagagtttctgattttggtggacggagcctctctgtcctatcttcaagcaccatcatt
gtgaaccctgacatcccagaggcctataagcttcgtggatggtttgactcagaaggacaa
gccttagatggcatttccatctctgatctaaagagtggaggagcaggtgggagcaatacc
aactggaaaactttatatgaggtcaagtcggagaacctgggccaaggtgacaagcctgac
tattttagctctgtggcaactgtggtgtatcttcgcaaagagaactgtatgtaccaggcc
tgcccaactcaggattgtaacaagaaagtgatcgaccagcagaacggattgtaccgctgc
gagaagtgtgacagtgaattccccaatttcaagtaccgcatgatcctgtcagtcaatatt
gccgattttcaagagaatcagtgggtcacatgtttccaggagtctgcagaggccatcctt
ggacaaagcactgcttatcttggagaattaaaagagaagaacgagcaagcatttgaggaa
gttttccagaatgccaactttcgatcttttacgttcaggatcagggtcaaactggagacc
tacaatgatgagtctcgaattaaggccacggtggtggacgtgaagcctgtggactacaga
gaatacggcagaaggctggtcatgaacatcaggagaaacgcggcgatgtga
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integrated database retrieval system
