Bubalus bubalis (water buffalo): 102392838
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Entry
102392838 CDS
T05912
Symbol
ARID1B
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X8
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03082
ATP-dependent chromatin remodeling
bbub04714
Thermogenesis
bbub05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102392838 (ARID1B)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
102392838 (ARID1B)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
102392838 (ARID1B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bbub03000
]
102392838 (ARID1B)
03021 Transcription machinery [BR:
bbub03021
]
102392838 (ARID1B)
03036 Chromosome and associated proteins [BR:
bbub03036
]
102392838 (ARID1B)
Transcription factors [BR:
bbub03000
]
Eukaryotic type
Helix-turn-helix
ARID
102392838 (ARID1B)
Transcription machinery [BR:
bbub03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
102392838 (ARID1B)
Chromosome and associated proteins [BR:
bbub03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
102392838 (ARID1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
102392838
NCBI-ProteinID:
XP_025150767
EnsemblRapid:
ENSBBUG00015005409
LinkDB
All DBs
Position
10:complement(10274560..10703793)
Genome browser
AA seq
2337 aa
AA seq
DB search
MAARAAAAARAGSGGRRAPPGPRPAPGARDLEAGARGAAAPGPMLGGGDGSGLSNVHHHP
LHPRHELNMAHNASAAAAVAASTNSAKSGGSEAEGGSAAALSSSSSSSSAAAAAASSSSS
SSGPGSAMETGLLPNHKLKTVGEAPAAAPHQQQHHHHHHHHHHHAHHLQHHHHHHAHHLH
HLHHHALQQQLNQFQQQQQQPQQQQQHQHPISNNNSLGGAGGGTPQPGADMEQPQHGGAK
DGAAAGSQADPPGQPLLSKPGDEDDAPPKMGEPAGGRFEQPGLGALGAQQQQQQQPPPPV
AVPGGGGGGGGPAAVSEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGLMHSASAA
AGAPNSMDPLQNSHEGYPNSQYNHYPGYSRPSAGGGGGGGGGGGGGGGGGGSGGGGGGGG
GAGGAGAVAAAAAAAAAAAAAGGGGGYGGSSSGYGVLSSPRQQGGGMMMGPGGGGAASLS
KAAAGAAAAAAAAAATGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPDYSSP
SAPPPPPPPSQPQSQAAAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHP
AMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPHSQPQQSSPYPGGSYGPPGPQRYP
IGIPGRPPGAMGGMQYPQQQMPPQYGQQGVSGYCQQGQQPYYNQQPQPPHLPPQAPYLPS
QSQQRYQPQQDMSQEGYGTRSQPPLASGKPNHEDLNLIQQERPSSLPDLSGSIDDLPTGT
EATLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSG
PISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQERGFMAGTQRNPQMSQYGPQQTGP
SMSPHPSPGGQMHPGISSFQQSNSSGTYGPQMSQYGPQGNYSRPPTYSGVPSASYSGPGP
SMGVNANSQMHGQGPSQPCGAVPLGRVPSAGMQNRPFPGNMSSMTPSSPGMSQQGGPGMG
PPMPTVNRKAQEAAAAVMQAAANSAQSRQGGFPGMNQSGLMASSSPYSQPMNNSSGLMNT
QAPPYSMTPNMVNSSTASMGLADMMSPSESKLPLPLKADGKEEGSTQPEGKSKKSSSSTT
TGEKITKVYELGNEPERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGG
LAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFECKIERGEEPPPEVFSTGDT
KKQPKLQPPSPANSGSLQGPQTPQSTGSNSMAEVPGDLKPPTPASTPHGQMTPMQGGRSS
TVSVHDPFSDASESSFPKRNSMTPSTPYQQGMSMPDVMGRMPYEPNKDPFGGMRKVPGSS
EPFMTQGQMPTSSMQDMYNQSPSGAMSSLGMGPRQQFPYGTSYDRRHEPYGQQYPGQGPP
SGQPSYGGHQPGLYPQQTNYKRHMDGMYGPPAKRHEGDMYNMQYGSQQQEMYNQYGSSYS
GPDRRPLQGQYPYPYNRERMQGPGQIQPHAIPPQMMGGPMQSSSSEGPQQSMWATRNDMP
YPYQNRQGPGGPTQAPPYPGMNRTDDMMVPDQRINHESQWPSHVSQRQPYMSSSASMQPI
TRPPQSSYQTPPSLPNHISRAPSPASFQRSLESRMSPSKSPFLPSMKMQKVMPTVPTSQV
TGPPPQPPPIRREITFPPGSVEASQPVLKQRRKITSKDIVTPEAWRVMMSLKSGLLAEST
WALDTINILLYDDSTVATFNLSQLSGFLELLVEYFRKCLIDIFGILTEYEVGDPSQKALD
HNAAKRDDSQSLADDSGREEEDAECIEEEEDEEDEEEEDSGRAETEDRSSMAVASPDATT
DPKEKPRQASKFDKLPIKIVKKNNLFVVDRSDKLGRVQEFSSGLLHWQLGGGDTTEHIQT
HFESKMEIPPRKRPPPPLSSTGRKKDQEGKGDSDDHQEKSIIATIDDVLSARPGALPEEA
NPGTQTESSKFPFGIHQARSHRNIKLLEDEPRSRDEAPLCTIAHWQDSLAKRCICVSNIV
RSLSFVPGNDAEMSKHPGLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKDEW
WWDCLEVLRDNTLVTLANISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGP
NSVLSPQRLVLETLCKLSIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSM
ALLSNLAQGDALAARAIAVQKGSIGNLISFLEDGVTMAQYQQSQHNLMHMQPPPLEPPSV
DMMCRAAKALLAMARVDENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQIGQL
NT seq
7014 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcgggcagcagcagcagcgcgggcgggcagcggcgggcggcgggcgcccccg
gggccgcggccggcgcccggggcccgggacctggaggcgggggcgcgcggcgcggcggca
ccgggacccatgctggggggcggcgacggcagcggcctgagtaatgtgcaccaccacccc
ctgcacccccgtcacgaactgaacatggcccataacgcgagcgccgcggccgcggtcgcc
gccagcactaacagcgccaagagcggcggctccgaggcggagggtggaagcgccgccgcg
ctgtcctcctcctcctcctcctcctccgccgcggcggcggcggcgtcctcctcttcctcc
tcgtcgggcccgggctcggccatggagacggggctgctccccaaccacaaactgaaaacc
gttggcgaagcccccgccgcagcgccccaccagcagcagcaccaccaccaccaccaccat
caccaccaccatgcccaccacctccaacaccaccaccaccaccatgcccaccacctccac
cacctccaccaccacgcactacagcagcagctaaaccagttccagcagcagcagcagcaa
ccacagcagcagcagcagcaccaacatcccatttccaacaacaacagcctcggcggcgcg
ggcggcggcacgcctcagcccggtgccgacatggagcagccgcaacatggaggcgccaag
gacggtgccgctgcgggcagccaggccgaccccccgggccagccgctgctgagcaagccg
ggcgacgaggacgacgcgccgcccaaaatgggggagccggcaggcggccggttcgagcag
ccgggcctgggcgccctgggcgcgcagcagcagcagcagcagcagccgccgccgccggtc
gccgtgcccgggggtggcggaggcggcggcggcccggcggccgtctcggagtttaataat
tactatggcagcgctgccccagctagcggcggccccggcggccgcgctgggccttgcttt
gatcaacatggcggacaacaaagccccgggatggggctgatgcactccgcctcagctgcc
gccggagcccccaacagcatggaccccctgcagaactcccacgaagggtaccccaacagc
cagtacaaccattatccgggctacagccggcccagcgcgggcggcggcggcggcggcggc
ggcggtggaggaggaggaggaggaggaggaggcagcggaggaggaggaggaggaggagga
ggagcaggaggagcgggagctgtggcggcggcggccgcggcggcggcggcagcagcagca
gcaggaggcggcggcggctatgggggctcgtcctcggggtacggggtgctgagctccccc
cggcagcagggcggcggcatgatgatgggccccgggggcggcggggccgcgagcctcagc
aaggcggccgccggcgcggcggcggcggcagcggcggcggcggcgacggggggcttccag
cgcttcgccgggcagaaccagcacccgtcgggggccaccccgaccctcaaccagctgctc
acctcgcccagccccatgatgaggagctacggcggcagctacccggactacagcagcccc
agcgcgccgccgccgccgccgccgccgtcgcagccccagtcccaggcggcagcagcggcg
gcgggggcggcggcgggcggccagcaggcggccgcgggcatgggcttgggcaaggacatg
ggcgcccagtacgccgctgccagcccggcctgggcggccgcgcaacaaaggagccacccg
gcgatgagccccggcacccccggcccgaccatgggcagatcccagggcagcccaatggat
cccatggtgatgaagagacctcagctgtatggcatgggcagtaaccctcattctcagcca
cagcagagcagcccttaccctggaggttcctacggccccccaggcccacagcggtatcca
atcggcattccaggtcggcccccgggggccatgggaggcatgcagtacccccagcagcag
atgccacctcagtacggacagcagggtgtgagcggttactgccagcagggccagcagcct
tactacaaccagcagccgcagcctccgcaccttcccccgcaggcgccatatctgccctcc
cagtcccagcagaggtaccagccgcagcaggatatgtctcaggaaggctatggaactagg
tctcaacctcctctggcttctggaaaacctaaccatgaagacttgaacttaatacaacaa
gaaagaccatcaagtttaccagacctgtctggctccattgatgacctccccacgggaacg
gaagcaactttgagctcagcagtcagtgcatctgggtccacaagcagccaaggagatcag
agcaacccagctcagtcacctttctctccgcatgcatctccccatctctccagcatccct
gggggcccatcgccttctcctgtcggctctcctgtaggaagtaaccagtcacgatctggt
ccaatttctcctgccagtattccaggaagtcagatgccccctcaaccacctgggagccag
tcagaatccagttctcatcctgccttgagccagtcaccaatgccacaggaaagaggtttt
atggcaggcacacaaagaaaccctcagatgtctcaatatggacctcagcagacaggacca
tccatgtcgcctcatccttctcctggaggccagatgcaccctggaatcagtagctttcag
cagagtaactcaagtggaacttacggtccacagatgagccagtatggaccacaaggtaac
tactccagacccccaacatacagtggggtgcccagtgcaagctacagcggcccagggccc
agcatgggcgtcaatgccaacagccagatgcatggacaagggccaagccagccatgtggt
gccgtgcccctgggacgagtgccatccgcaggcatgcagaacagaccatttcctggaaac
atgagcagcatgacccccagttctcctggcatgtctcagcagggggggccaggaatgggg
ccaccaatgccaaccgtgaaccgtaaggcacaggaggcagctgctgcagtgatgcaggcc
gctgcgaactcggcgcaaagcaggcaaggcggctttcccggcatgaatcagagtggactc
atggcttccagctcgccctacagccagcccatgaacaacagctctgggctaatgaacacc
caggcacccccctacagcatgacgcccaatatggtgaacagctcaacagcatctatgggt
cttgcagatatgatgtctccaagtgaatccaaactgcccctgcctctcaaagccgacggt
aaagaagaaggcagcacacagccggagggcaagtcgaagaagtccagctcatccaccacc
actggggagaagatcacaaaggtgtatgagctggggaatgagccagagaggaagctgtgg
gtggaccgctacctcaccttcatggaggagaggggctccccggtctcaagtctgcctgca
gtgggcaagaagccgttggacctgttccgactctatgtctgcgtcaaagagatcggaggt
ttggcacaggttaataaaaacaagaagtggcgtgagctggcaaccaacctaaatgttggc
acttcgagcagtgcagcaagctccctgaaaaagcagtatattcagtacctgtttgccttt
gagtgcaagatcgagcgtggggaggagcccccgccggaagtcttcagcacaggcgacacc
aagaagcagcccaagctccagccgccatctcctgctaactcaggatccttgcaaggtcca
cagaccccccagtcaactggcagtaattcgatggcagaggttccaggtgacctgaagccg
cctactccagcctccacccctcatggacagatgaccccaatgcaaggtggaagaagcagc
actgtcagtgtgcacgacccattctcagacgcaagtgagtcatcgttccccaaacgcaac
tccatgactccaagcaccccgtaccagcagggcatgagcatgccagacgtgatgggcagg
atgccctacgagcccaacaaggacccctttggagggatgaggaaagtgcctggaagcagc
gagcctttcatgacacaaggacagatgcccaccagcagcatgcaggatatgtacaaccag
agtccgtctggagccatgtctagtcttggcatggggccacggcagcagtttccctacgga
accagttacgaccgaaggcatgaaccttacgggcagcagtacccgggccaaggccctccc
tcaggacagccgtcatatggaggacaccagccaggcctgtacccacagcagacgaactac
aagcgccatatggatggcatgtatgggcctccagccaaacgccacgagggagacatgtac
aacatgcagtatggcagccagcagcaggagatgtacaaccagtacgggagctcctactct
ggcccagaccggaggcccttgcagggacagtatccttatccctacaaccgagagaggatg
cagggcccggggcagatacagccacatgccatccctccgcagatgatgggcggcccgatg
cagtcgtcctccagcgaaggacctcagcagagcatgtgggcaacccgcaacgatatgcct
tatccctaccagaacaggcaaggcccgggcggccccacgcaggccccgccttaccccggc
atgaaccgcaccgatgacatgatggtccctgatcagaggataaaccacgagagccagtgg
ccttcccacgtcagccagcgtcagccttacatgtcctcgtcagcctccatgcagcccatc
acgcgcccgcctcagtcgtcctaccagacgccaccctcactgccaaaccacatctccagg
gcacccagccccgcctccttccagcgctccctggagagccgcatgtctcccagcaagtcc
cccttcctcccctccatgaagatgcagaaggtcatgcccaccgtccccacgtcccaggtc
accgggccacccccccagccgccccccatcagaagggagatcaccttccctcctggctcc
gtggaagcctcacagccagtcctgaaacaaaggcggaagattacctcaaaagatatcgtt
actccagaggcctggcgtgtgatgatgtcccttaagtcaggtctcttggctgaaagtact
tgggctttggacactattaatattcttctctatgacgacagcactgtcgctactttcaat
ctctcccagttgtccggatttctcgaacttttagtagagtatttcaggaaatgcctgatt
gacatttttggaattcttacggaatatgaagtgggagaccccagccaaaaagcacttgat
cacaatgcggcaaagagagatgacagccagtccttagccgacgattctgggagagaggaa
gaagatgctgaatgtattgaggaggaggaggacgaggaggacgaggaggaggaagacagc
gggagggcggagacggaggacaggagcagcatggctgtggcctcccccgatgccaccaca
gatccaaaggagaagcccaggcaagccagtaaatttgacaagctgccaatcaagatagtc
aaaaagaacaacctgtttgttgtcgaccgctctgacaagctgggtcgcgttcaggagttc
agcagtggacttctgcactggcagctcggtgggggagacaccactgagcacatccagact
cacttcgagagcaagatggagattcctcctcgcaagcggccgcctccccctttgagctcc
acaggcagaaagaaagaccaggaaggcaaaggggattctgacgaccaccaagagaaaagc
atcatcgcaaccatcgatgatgtcctatctgctcggccaggggctctgcccgaagaggca
aaccctggtacccagaccgaaagcagcaagtttcccttcggaatccatcaagccagaagt
caccgcaacatcaagctgctggaggacgagccaaggagccgggacgaggccccactctgc
accatcgcacactggcaggactcgctggccaagcgctgcatctgcgtgtccaatattgtc
cggagcttgtcttttgtgcctgggaatgacgcggaaatgtccaaacacccaggcctggtg
ctgatcctggggaagctgattcttcttcaccatgagcatcccgagagaaaacgagcgccg
cagacctacgagaaggaggaagacgaggacaaaggggtggcctgcagcaaagatgagtgg
tggtgggactgcctcgaggtcttaagggacaacacgctggtcaccttggccaacatttct
gggcagctagacttgtccgcttacacggaaagcatctgcttgccaattttggatggcttg
ctgcactggatggtgtgcccatcagcagaggcacaagacccctttcccacggtgggaccc
aactctgtcctgtcgcctcagagactcgtgctggagacgctctgtaaactcagcatccag
gacaacaatgtggacctgatcttggccacgcctccgtttagtcgtcaggagaaattctat
gccacgttagttaggtacgttggggatcgcaaaaacccagtctgtcgagaaatgtccatg
gcgcttttatcgaaccttgcccaaggggacgcactggctgcaagggccatagctgtccag
aagggaagcatcggaaacttgataagcttcctagaggatggggtcacaatggcccagtat
cagcagagccagcacaacctcatgcacatgcagcccccgcccctagagccccctagcgtg
gacatgatgtgcagggcagccaaggctctgctggccatggccagagtggacgagaaccgc
tccgagttccttctgcacgagggccgattgctggatatctcaatatcagccgttctgaac
tctctggtggcatctgtcatctgtgatgtactgtttcagatcgggcagttatga
DBGET
integrated database retrieval system
