KEGG   Bubalus bubalis (water buffalo): 102404073
Entry
102404073         CDS       T05912                                 
Symbol
MDC1
Name
(RefSeq) mediator of DNA damage checkpoint protein 1 isoform X5
  KO
K20780  mediator of DNA damage checkpoint protein 1
Organism
bbub  Bubalus bubalis (water buffalo)
Brite
KEGG Orthology (KO) [BR:bbub00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bbub03400]
    102404073 (MDC1)
DNA repair and recombination proteins [BR:bbub03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    102404073 (MDC1)
SSDB
Motif
Pfam: BRCT_2 FHA RTT107_BRCT_5 BRCT Yop-YscD_cpl
Other DBs
NCBI-GeneID: 102404073
NCBI-ProteinID: XP_044794253
EnsemblRapid: ENSBBUG00015011809
LinkDB
Position
2:complement(24182954..24196114)
AA seq 1670 aa
MEDTQILNWEVEEEEEVEERPSESLGYSLEPLGQLRIFSSSYGPEKDFPLYLGKNMIGRM
PDCSVALPFSSISKQHAVIEISAWDKAPVLRDCGSLNGTQILRPPKVLGPGVSHRLRDRE
LILFADLPCQYHRLDVPRPFVSRGPLTVEETPRVQGGTQPPRLLLAEDSEEEVDSFLDKC
VVKGPRTSSLATVVPESDEEGPSPAPDGPGPPSAFNLNSDTDEEESQESGAGEASSAPRR
GSAAETEQPEPVTAEIQIEKDQCSVKEKNRDTEIERDVRNGVVPTGVILERSQPSGEDSD
TDVSDESGPPRRLAGVRPKRAWSCNFIDSDTDGEDEGIPATPAVVPMKERQIFHEAGTQS
PQAPGVARQQESPADGDTDIEEGEVPPDRSQASMVIDSNTDDEEEVSAALTLARLRESQA
DSEDLDLPATQCFADRKNQSLEAPSMEDEPTQAFLFTLPQEPGPSCCSSQATGSLNEAWE
VLATQPFCPREYEASETQTAVTLLDTRASCPPPSRTAQQEQHPESPVRAEALGMEGRGMQ
TVEKDKGTQRETTERVIPEGGPPQNETKKLPSEGEREDVTGEEELIRGIQGREQNQVLAR
DTQSQESDKKVKSASTGRGMEIVKLETETPKETQEKEREKQTLAGEIFESEAGKLVVERE
SEVGGLEVKGPQELLDRGPQMRETEAGGQDQKGQASGPPSEPGAGAGDLQGFTSDPVASG
SQAGGGRGAPGSPRRQQRGDLNCEMPPAEKASRGDQESPDACLPPAAPEASAALPNSLIS
QIQKHPAPQSLLFPSPAPLELPIPRTRENENQEAPETPFSSELNSVHPEPKVRPQGSSPV
SSLPLEPHPTTPTGQPIALEPTSGVSRSGTHSSFDVTASSVVPTALALQPSTSTDQPVAP
KPTLRAPRGRAQRSSVKTPEPNVRTDQPIAPELTAKATRGRAQRSSVKTPKPDNPTIPKP
QPSTSTDQPVTPKPTSRAPRGRTPKSSAKTPEPAVPTASELQPAAPKDQPVAPELTSRAT
RGRTQRSSIKTSKPDMSTAPEPQPSTSTDQPVTPKPTSRAPRGRTPRSSSKTPEPVVSTA
SELQPSALTDQPVTPELTSRATRGRAQRSSVKTPDPVTTTTPELQPSTSTDQLVTPKRPS
RAPRGRTRRSSAKTPEPVVPTASELQPSAPADQPVGPWATQCRRHRSSVKTLEPVVPTAP
EPQPSTSKDQSVAPEPTSQATQSQTHRSSVKTSQPTEPTAPDLKPSSPTDQPVTPKVIAQ
GGPSRTRRASTASAVLVPTTPEFQCPVPSEQPLSPDPIPEVNCSLRPRATRKHGSPTAHV
HEPCTAPPEPNSRSSRNQTHGAMKAAKLLSTIPEPAFAQLPEAPPHTPQMPKEEAADGSG
FTPEPQPRASQNRKRPSATAHSPPLQKRLQRGRVPQKAASLKEEENPAARPRKEEGVVIP
GPGKRKREQTEEESQGRPSRSLRRTKPVQESTAPKVLFTGVVDARGERTVLALGGSLASS
VAEASHLVTDRIRRTVKFLCALGRGIPILSLAWLHESRKAGCFLPPDEYLVTDPEQEKNF
GFSLREALSRARERRLLEGYEIHVTPGVQPPPPQMGEIINCCGGAILPSMPRSYKPQRVV
ITCSQDFPRCAIPSRVGLPVLSPEFLLTGVLKQEVKPEAFAFSTVEMSST
NT seq 5013 nt   +upstreamnt  +downstreamnt
atggaagacacccaaattttaaactgggaagttgaagaagaggaggaggttgaagagaga
cccagtgaatctctggggtatagcttggagcccctagggcagctgcgtatcttcagtagt
tcctatggaccagaaaaagacttcccactctacctcgggaagaacatgataggccgaatg
cctgattgctctgtggccctgcccttttcatcaatctccaaacaacatgcagtgattgaa
atctctgcctgggacaaggcgcctgtcctccgggattgcgggagcctcaatggcactcaa
atcctgcggcctcctaaggtcctgggccctggggtgagtcatcgtttgcgggaccgggag
ttgattctctttgctgacttgccctgccagtaccatcgcttggatgtcccccggcctttt
gtctcccggggccctctaactgtagaggagacacccagggtacagggaggaactcaaccc
cccaggcttctgttggctgaggactcagaggaagaagtagattcctttttggacaagtgt
gtggtgaaaggaccaaggacctcctctttggcaacagtcgttccagagagtgatgaagaa
gggccttcccctgccccagatgggcccgggccaccttctgccttcaacttgaacagcgac
acggatgaggaagaaagtcaggaatcaggagcaggggaggcctcttcagctcccagaaga
ggtagcgctgcagagacagaacagcctgaacctgtcacagccgaaatccagattgaaaaa
gatcagtgttccgtgaaggagaagaacagggacacagaaatcgagagggatgtgaggaat
ggggtggttccgactggagtgattctggagaggagccagccttctggggaggacagtgac
acagatgtgagtgatgagagtgggcctccaagaaggcttgctggggtccgtccaaaaagg
gcctggtcttgtaacttcatagatagtgataccgatggggaggatgaggggatccctgct
accccagcagtggttcccatgaaggagaggcagatcttccacgaagctggtacacagagc
ccccaggcacctggtgtggcacgtcagcaggagagcccagctgatggtgatacagatata
gaggagggggaggtccccccggacagaagccaagcttccatggtgatcgacagcaataca
gacgatgaggaagaagtctctgcagcactgacactggcacgtctaagagagagccaggct
gattctgaagatctggacttaccagctacccagtgctttgcagacagaaagaatcagagc
ctggaagcccccagcatggaggatgagcccacccaggccttcctgtttactctgccccaa
gagcctggcccttcctgttgcagctcccaggccacaggttccctgaatgaggcatgggag
gtcttggcgacacagccattctgtccgagagagtatgaggcctccgagacccaaaccgct
gtcaccctccttgacacccgtgcatcttgcccccctccatctaggacagcacagcaagag
caacatccagagagcccagtccgtgcagaagcactggggatggaaggcagagggatgcag
actgtggagaaagacaagggtacccaaagagaaacaacagagagggtgatccctgaagga
gggccaccgcagaatgaaaccaagaaactgccctcagaaggagagagggaagatgtgacg
ggagaggaagaattaatcagggggatacagggcagagaacaaaatcaggtgttagctaga
gatactcagagccaagaatctgacaaaaaagtgaaaagtgcaagtactggaaggggaatg
gagattgtaaagttagaaactgagacacccaaggaaacacaggagaaagagagagaaaag
cagactctcgcaggggaaatatttgagagtgaagcagggaaactggtagtagagagagag
agtgaggtaggtgggttagaagtcaagggaccccaagagctactggacagaggcccacag
atgagggagacagaggcggggggccaggaccagaaaggccaagcctctggtccgccatca
gagcctggagcaggggcaggagaccttcagggatttacttcagacccagtagcttctggg
agccaggcaggtggaggaaggggagccccagggagccccaggaggcagcagagaggtgac
ttgaattgcgagatgccacctgctgagaaggcttccaggggtgatcaggaatccccagat
gcttgtctgcctcctgcagcacctgaagcctcagctgcactcccaaactccctcatctct
cagatccaaaaacatcccgcacctcagtccctcctttttccctctccagctcctttagaa
ctgcctattcccaggaccagagaaaatgagaatcaggaagctccagagactcccttctcc
tcagagctgaactctgtccacccagaacccaaagtcaggccgcaggggtcttctccagtt
tcttctctaccccttgagccccaccctaccacccccacaggccagcctattgcccttgaa
cccacatctggggtctctcggagcgggacacatagttcctttgatgtaactgcctcatca
gttgtccccacagcccttgcactgcagccatccacctccacagaccagcctgtcgcccct
aagcccacacttcgggcccctcggggcagggcacagaggtcttctgtcaaaacccctgaa
cccaatgtccgcacagaccagcctattgcccctgagctcacagctaaggccactcggggc
agggcacagaggtcttctgtcaagactcccaaaccagataaccccacaatacccaagccc
cagccttctacttccacagaccagcctgtcacccccaaacccacatctcgggcccctcgg
ggcaggacacctaagtcttctgccaagactcctgaaccagctgtccccacagcctctgag
ctccagcctgctgcccctaaagaccagcctgttgctcctgagctcacatctagagccact
cggggcaggacacagaggtcttctatcaagacttccaaaccagatatgtccacagccccc
gagccccagccttccacttccacagaccagcctgtcacccccaaacccacgtctcgggcc
cctcgaggcaggacacctaggtcttcctccaagactcctgaaccagttgtctccacagcc
tctgagctccagccttctgccctcacagaccagcctgtcactcctgagctcacatctagg
gctactcggggcagggcacagagatcctctgtcaaaacccctgatccagttaccaccaca
acacctgagctccagccttccacctccacagaccagcttgtcacccccaaacgcccatct
cgggcccctcgaggcaggacacgtaggtcgtctgccaagactcctgaaccagttgttccc
acagcctctgagctccagccttctgcccctgcagaccagcctgttggtccttgggccact
cagtgtagaagacataggtcttctgtcaagaccctggaaccagttgtccccacagcccct
gaacctcagccttctacttctaaagaccagtctgtcgctcctgaacccacatctcaggcc
actcagagccaaacacataggtcctctgtcaagacatcccagccaactgaacccacagcc
cctgacctcaaaccttcctcccccacagaccagcctgtcactcccaaggtcatagctcag
ggtggtccaagcaggacacgaagggcttctacagcaagtgctgtgctagttcctactacc
cctgaatttcagtgtccagtcccctcagaacagcctctttcccctgaccccatccccgaa
gtcaactgcagccttaggccgagggccactaggaaacatgggtctcccacagctcatgtt
catgagccctgtaccgcaccccctgaacctaactcccgctcctcaaggaaccaaacacat
ggggcaatgaaggcagccaagctccttagcaccattcctgagcctgcctttgcccagctc
cccgaggcaccgcctcacactccccagatgccaaaggaggaggcagcagatgggtcaggc
ttcaccccagagccccagcctagggcctctcaaaaccgcaagaggccttcagctactgca
cattcacctccacttcaaaaacggctccagagagggagagtccctcagaaggcagcatcc
cttaaggaagaagaaaatccagcagcgaggccaaggaaggaagagggtgtagtgattccg
ggtccaggcaagagaaagagagagcagacagaggaggagtcccagggaagaccgagccgt
agcctgcgacggaccaaacctgttcaggagtccacggcccccaaagtgctcttcacgggc
gtggtggatgctcgcggagaaaggacagtgctggccctggggggcagtctggccagctca
gtggctgaggcttctcacctggtgactgatcggatccgccggacggtcaagtttctgtgt
gccctgggccggggcatccccatcctctccctggcctggctgcatgagtcccgcaaggca
ggctgcttcttgcccccggacgaatatttggtgactgatcccgagcaggagaagaacttc
ggcttcagccttcgggaggccctgagccgagctcgggagcgaaggctgctggagggctat
gagattcacgtgacccccggagtccaaccaccgccacctcagatgggagagatcatcaac
tgctgtggaggcgccatcctgcctagcatgccccggtcctacaagcctcagagggtcgtg
atcacatgttcccaggacttccctcgatgtgccattccatctcgggttgggctgcctgtc
ctctcacccgagttcctgctgacgggagtactgaagcaggaagtcaagccagaggccttt
gccttctccactgtggaaatgtcatccacctga

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