Bubalus bubalis (water buffalo): 102405654 Help Entry 102405654         CDS       T05912                                  Symbol COL4A1 Name (RefSeq) collagen alpha-1(IV) chain   KO K06237   collagen type IV alpha Organism bbub  Bubalus bubalis (water buffalo) Pathway bbub04151   PI3K-Akt signaling pathway bbub04510   Focal adhesion bbub04512   ECM-receptor interaction bbub04820   Cytoskeleton in muscle cells bbub04926   Relaxin signaling pathway bbub04933   AGE-RAGE signaling pathway in diabetic complications bbub04974   Protein digestion and absorption bbub05146   Amoebiasis bbub05165   Human papillomavirus infection bbub05200   Pathways in cancer bbub05222   Small cell lung cancer Brite KEGG Orthology (KO) [BR:bbub00001]  09130 Environmental Information Processing   09132 Signal transduction    04151 PI3K-Akt signaling pathway     102405654 (COL4A1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     102405654 (COL4A1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     102405654 (COL4A1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     102405654 (COL4A1)  09150 Organismal Systems   09152 Endocrine system    04926 Relaxin signaling pathway     102405654 (COL4A1)   09154 Digestive system    04974 Protein digestion and absorption     102405654 (COL4A1)  09160 Human Diseases   09161 Cancer: overview    05200 Pathways in cancer     102405654 (COL4A1)   09162 Cancer: specific types    05222 Small cell lung cancer     102405654 (COL4A1)   09172 Infectious disease: viral    05165 Human papillomavirus infection     102405654 (COL4A1)   09174 Infectious disease: parasitic    05146 Amoebiasis     102405654 (COL4A1)   09167 Endocrine and metabolic disease    04933 AGE-RAGE signaling pathway in diabetic complications     102405654 (COL4A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:bbub04147]     102405654 (COL4A1)    00536 Glycosaminoglycan binding proteins [BR:bbub00536]     102405654 (COL4A1) Exosome [BR:bbub04147]  Exosomal proteins   Exosomal proteins of other cancer cells    102405654 (COL4A1) Glycosaminoglycan binding proteins [BR:bbub00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    102405654 (COL4A1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen C4 Motif Other DBs NCBI-GeneID:  102405654 NCBI-ProteinID:  XP_025118865 EnsemblRapid:  ENSBBUG00015006193 LinkDB All DBs Position 13:2140002..2277745 Genome browser AA seq 1669 aa AA seqDB search MGPRLGVWLLLLLAALLLHEESSRAAAKGGCAGSGCGKCDCHGVKGQKGERGLPGLQGVI GFPGMQGPEGPQGPPGQKGDTGEPGLPGTKGTRGPSGVPGYPGNPGLPGIPGQDGPPGPP GIPGCNGTKGERGPVGPPGLPGFAGNPGPPGLPGMKGDPGEILGHIPGTLLKGERGYPGQ PGAPGSPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKGQMGLSFQGPKGEKGDQGVSGPP GLPGQAQVITKGDTAMRGEKGQKGEPGFPGLPGFGEKGEPGKPGPRGKPGKDGEKGEKGS PGFPGDSGYPGQPGQDGLKGEKGEAGPPGLPGPVIGTGPLGEKGEPGYPGGPGAKGETGP KGFPGIPGQPGPPGFPTPGLIGAPGFPGDRGEKGEPGLPGVSLPGPSGRDGLPGPPGPPG PPGQPGHTNGIVECQPGPPGDQGPPGIPGQPGLTGEVGEKGQKGDSCLICDTAELRGPPG PQGPPGEIGFPGQPGAKGDRGLPGRDGLEGLPGPQGAPGLMGQPGAKGEPGEIYFDIRLK GDKGDPGFPGQPGMPGRAGSPGRDGQPGLPGPRGSPGSVGLKGERGPPGGVGFPGSRGDI GPPGPPGFGPIGPIGDKGQMGFPGTPGAPGQPGPKGEAGKVVPLPGPPGAEGLPGSPGFQ GPQGDRGFPGSPGRPGLPGEKGAIGQPGIGFPGPPGPKGVDGLPGDAGPPGNPGRQGFNG LPGNPGPPGQKGEPGVGLPGLKGLPGIPGIPGTPGEKGNIGGPGIPGEHGAIGPPGLQGL RGDPGPPGFQGPKGAPGVPGIGPPGAMGPPGGQGPPGSSGPPGVKGEKGFPGFPGLDMPG PKGDKGSQGLPGLTGQSGLPGLPGQQGTPGQPGIPGPKGEMGVMGTPGQPGSPGPAGVPG LPGAKGDHGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMKGEKGDQGEKGQTG PTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGVSGIPGAPGLPGPKGSTGGMGLPG MPGPKGVAGIPGPQGIPGLPGDKGAKGEKGQAGLPGIGIPGRPGDKGDQGLAGFPGSPGE KGEKGSTGIPGMPGSPGPKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGIKGEAGLPGK PGPTGPAGQKGEPGSDGIPGSVGEKGESGLPGRGFPGFPGSKGEKGSKGDVGFPGLAGSP GIPGSKGEQGFMGPPGPQGQPGLPGTPGHAVEGPKGDRGPQGQPGLPGHPGPMGPPGLPG LEGLKGDKGSPGWPGTPGAPGPKGDPGFQGMPGIGGSPGITGAKGDMGPPGVPGFHGQKG APGLQGIKGDQGDQGFPGTKGLPGPPGPPGPFSIIKGEPGLPGPEGPAGLKGLQGPPGPK GQQGVTGSVGLPGPPGEPGFDGAPGQKGETGPFGPPGPRGFPGPPGPDGLPGSMGPPGTP SVDHGFLVTRHSQTIDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM PFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAV HSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG TCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRRT NT seq 5010 nt NT seq  +upstreamnt  +downstreamnt atggggccccggctcggcgtctggctgctgctgctgctcgccgcgctcctgctccacgag gagagcagccgggccgccgcgaagggtgggtgtgccggctccggctgcgggaagtgcgac tgccatggcgtgaagggacagaagggagaaagaggcctcccggggttacaaggggtcatc gggtttcccggaatgcaaggacccgaggggccgcagggaccaccaggacagaagggtgac accggcgagcccggactgcccggcacgaaagggacgagaggaccgtcaggagtgcctggt taccctggaaacccaggacttcctggtattcctggccaggatggtcctccaggtccccca ggtattcctggatgcaatgggacaaagggtgagagagggcctgtgggacctcccggtttg cctggattcgccggaaatcccggaccaccagggttaccgggaatgaagggagatccaggt gagattctgggccatataccagggaccctgctgaaaggcgaaagaggatatcctggacag ccgggagcacccggttcaccaggtctgccaggactgcaaggccccgtcggccccccagga ttcactggaccaccaggccctccaggccctcctggccctccaggtgaaaaggggcaaatg ggcttgagctttcaagggccgaaaggtgaaaagggtgatcaaggggtcagcgggccccca ggattaccaggacaggctcaagtcatcacgaaaggagacacggccatgcgaggcgagaag ggtcaaaaaggtgaacctggatttccggggctgccagggtttggagagaaaggagaacct ggaaaaccagggccccgtggaaaaccaggaaaagatggtgaaaaaggagaaaaagggagt ccagggtttccgggcgactcagggtacccaggacagcccggccaagacggtttaaaggga gagaaaggtgaagcaggtcctcccgggctgcccggacccgttattggcacgggaccgttg ggagagaaaggagagcccgggtacccagggggtccaggggcgaaaggggagacaggtccc aaaggtttcccaggaataccaggccagccaggccctccaggcttcccgactccggggctg attggtgcccccggcttccccggcgacagaggagagaagggtgaaccgggcttgccgggc gtgtcgctgccgggacccagtggaagggacgggcttcccggcccccccggcccccccggg ccccctgggcagccgggccacacaaatggaatcgtggaatgccagcctgggccgccaggg gaccagggtcctcccggaattccagggcagccagggctgacgggcgaagttggagaaaaa ggtcaaaaaggagacagttgcctcatctgtgacacagcagagcttcgtgggcccccaggg ccacagggaccccccggagaaataggtttcccaggacaaccaggggccaagggtgacaga ggcttgcccggcagggatggtctggaaggactgcctggtcctcaaggtgcgccggggctc atgggccagccgggagccaagggcgagcccggtgagatctacttcgacatacggctcaaa ggcgacaaaggagaccccggcttcccaggccagcccggcatgccaggcagagcgggctcc cccggaagagacggccaaccgggtctgcccggccccagaggctccccgggttcagtagga ttgaaaggggagcgtggccccccgggaggcgtcggattccccgggagccgtggcgacatc ggccctccagggcctccaggctttggtccgattggccccattggtgacaaaggacagatg ggcttcccaggaacccccggggccccaggccagccaggtcccaagggagaggcgggaaaa gtcgtgcccttgcccggcccccctggagcagaaggacttcccgggtcccctggcttccag gggccacaaggtgaccgaggttttcctggaagccccggaaggccaggcctccccggagag aagggcgccattggccagcctgggattggatttcctgggcctcccggtcccaaaggcgtt gatggtttacctggagacgctggacctcctgggaatccaggtcgtcaaggcttcaacggc ttacctggcaaccctggtccacctggccagaagggcgagcctggagttggtctgccggga ctcaaaggcctgcccgggatacctggcatccccggcacccctggggagaagggaaacatt ggaggaccgggaattcctggagagcatggcgccatcggccccccaggcctccaggggctc agaggtgacccaggaccacctggatttcaaggccccaaaggagctccgggagtccctgga atcggcccccctggagcaatgggcccccccggaggacagggacccccagggtcatcaggc ccccccggagtgaaaggagagaaaggcttccccggcttcccaggcctggacatgccgggc cccaaaggagacaaagggtcccaggggctccccggcctgacggggcagtctgggctgcct ggccttcctggacagcagggcacccccggccagcctggcattccaggtcccaagggagag atgggagtcatggggactccggggcagcccggctcgccaggaccagcgggcgtgccagga ttgccaggtgccaaaggggaccacggcttccccggctcttcgggacccaggggagaccct ggcttcaagggtgacaaaggcgatgtggggctccccggcaagccaggctccatggacaag gtggacatgggcagcatgaagggcgagaagggagaccaaggcgagaaaggacaaactggt ccgactggtgataaaggatcccggggagacccgggaaccccaggcgtgccgggaaaggac ggtcaggcaggacaccccgggcagccaggacctaaaggtgatccaggtgtgagcgggatc ccaggtgctccgggacttcctggtcccaaaggatccactggtggaatgggcctaccagga atgccaggaccaaaaggtgtggctggcatccccggcccgcagggcattcctggcttacct ggagacaagggggcaaaaggagagaaagggcaggcggggctgcctggcattgggattcca ggacggcccggggacaagggagaccagggcttagcaggatttcccggaagccccggcgag aagggagagaaaggaagcactgggatcccagggatgcccggatctccgggccccaaaggc tccccaggaagtgttggctatccgggaagccctgggttgcctggagagaaaggtgacaaa ggcctcccgggactggatggcattcctggcatcaaaggagaagcaggtcttcctgggaag cctggccccacgggtccagccggccagaaaggggagcctggcagcgatggaatcccaggg tcggtgggagagaagggcgagtcaggtctacctggaagaggattcccagggtttccaggg agcaaaggagagaaaggttcaaagggcgatgtgggcttccccggattagccgggagccca ggaattcctggatccaaaggagaacaaggattcatgggtcccccgggaccacagggacag ccaggattgccagggaccccaggccatgcagtagaggggcccaaaggagaccgcggcccg caaggacaacccggcctgccagggcatccgggacccatggggcctccaggcctccccggg ctcgaggggctgaaaggtgacaaggggagcccaggctggccgggcactccgggagctcca gggcccaagggagacccaggattccagggcatgccgggcatcggtggttctccaggaatc acaggagccaagggtgatatgggacctccaggagttccagggtttcacggtcagaaaggt gcccccggcctgcagggaatcaaaggtgaccaaggagaccaaggcttcccgggaactaaa ggtcttcctggccccccgggacccccgggtccgttcagcatcatcaagggggaaccaggg ctccctgggcccgagggccccgcgggtctgaaagggcttcagggacctccaggcccgaaa ggacagcaaggtgtgacgggatccgtgggcttgcctgggcccccaggtgaacccggcttt gacggcgcccctggccagaaaggagagacggggcccttcggccctccgggtccacgcggc ttcccgggtccgcccggccccgacgggctgccgggatccatgggtcccccgggcacccca tcggtcgatcacggcttccttgtgacccggcacagtcaaacaatagacgacccccagtgc cctcctgggaccaaaatcctctaccacggctactctctgctctacgtgcaaggcaacgag cgggcgcacggccaggacttgggcacggcgggcagctgtctgcgcaagttcagcaccatg cccttcctcttctgtaacatcaacaacgtctgcaactttgcgtcccgcaacgactactcg tactggctgtccaccccggagcccatgcccatgtccatggctcccatcaccggggagaac atccggcccttcatcagcaggtgtgctgtgtgtgaggctccagccatggtgatggccgtg cacagccagaccatccagatcccgcagtgccccaccggctggtcctcgctctggatcggc tactcctttgtgatgcacaccagcgccggggctgaaggctctggccaagccctcgcctcc cccggctcgtgtctggaggagttcagaagcgcccccttcatcgagtgccacggccgcgga acttgcaattactacgcgaatgcttacagcttttggcttgccacgatagagcggagcgag atgttcaagaagcccacgccgtccacgctgaaggccggggagctgcgcacgcacgtcagc cggtgccaggtgtgcatgcggaggacataa

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