Bubalus bubalis (water buffalo): 102411052
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Entry
102411052 CDS
T05912
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03013
Nucleocytoplasmic transport
bbub03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102411052 (UPF2)
03015 mRNA surveillance pathway
102411052 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbub03019
]
102411052 (UPF2)
Messenger RNA biogenesis [BR:
bbub03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102411052 (UPF2)
mRNA cycle factors
P-body specific factors
102411052 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
102411052
NCBI-ProteinID:
XP_025120272
EnsemblRapid:
ENSBBUG00015024369
LinkDB
All DBs
Position
14:67188455..67285807
Genome browser
AA seq
1271 aa
AA seq
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MPAERKKPASMEEKESLLNSKEKDCSERRPVSSREKPKEEIKLTAKKEVIKVPEDKKKKL
EEDKRKKEDKERKKKEEEKVKAEEELKKKEEEEKKKHEEEERKKQEEQVKRQQEEEAAQL
KEKEESLQLHQEAWERHQLRKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKSCQNKESSKDDSKETKEPKDNKEVSSPDDLELELENLEINDDTLELEGGDEAE
DLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANR
KKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINIE
TKNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESH
LRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYK
DLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDV
GIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGV
NSDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEV
WTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVHDLEREFLIKLGLVNDKDSKD
SMTEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNDDDEGEEEEEENTDYLTD
SNKENETDEENTEVMIKGGGLKHVPCVEDEDFIQALDKMMLENLQQRSGESVKVHQLDVA
IPLHLKSQLRKGPPLGGGEGETESADTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQ
QQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNA
DLIFKTGGRRR
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgtaaaaagccagcaagtatggaagaaaaagaatctttactaaacagc
aaggaaaaagactgcagtgaaaggcggccagtgagcagcagggagaaaccaaaagaggag
atcaagcttactgccaagaaggaggttattaaggtccctgaagataagaagaagaaactg
gaagaagataaaagaaaaaaagaagacaaggaacgcaagaaaaaagaagaagaaaaggtg
aaggcagaggaggaattaaagaaaaaagaggaagaagaaaaaaagaaacatgaagaagaa
gagagaaagaagcaagaagaacaggtgaaacgtcagcaggaagaagaggctgcccagttg
aaagagaaagaggaatcccttcagcttcatcaggaagcttgggaacgacatcagttgagg
aaagaacttcgtagcaaaaaccaaaatgctccagacaaccgaccagaggaaaatttcttt
agccgactagactcaagtttgaagaaaaataccgcttttgtcaagaaactaaaaactatt
acagaacaacagagagactccttgtcccatgattttaatggcctaaatttaagcaaatac
attgcagaggctgtcgcttctattgtggaagcaaagctaaaaatatctgacgtgaattgt
gctgtgcacttatgctcgctctttcaccagcgctacgccgactttgccccatcacttctt
caggtttggaaaaaacattttgaagccaggaaagaagagaaaacacctaacattaccaag
ttaagaactgatttgcgtttcattgcagaattgacaatagttgggattttcactgacaag
gaaggtctttccttaatctatgaacagctaaaaaatattattaatgctgatcgggaatcc
catactcatgtttctgtggtgattagtttttgtcgacattgtggagatgatattgctgga
cttgtaccaaggaaagtaaagagtgctgcagagaagtttaatttgagttttcctcctagt
gagataattagtccagagaaacagcaacctttccagaatcttttaaaagaatactttacg
tctttgaccaaacatctgaaaagggaccacagggagctacagaatactgagagacaaaac
aggcgtattctacattctaaaggggagttaagtgaagatagacataaacagtatgaagaa
tttgctatgtcttatcaaaagctactggcaaattctcaatccttagcagaccttttggat
gaaaatatgccagatcttcctcaagataaaccaacaccagaagagcatgggcctggaatt
gatatatttacacctggtaaacctggagaatatgacttagaaggtggtatatgggaagat
gaagatgctcggaatttttatgagaacctcattgatttgaaagcttttgttccagccatc
ttgtttaaagataatgaaaaaagttgtcagaataaagagtccagcaaggatgattccaaa
gagacaaaggaacctaaggataataaggaggtatcaagtcctgatgatttggaacttgag
ttggagaacctggaaattaatgatgacacattggagctagagggtggagatgaagctgaa
gatcttacaaagaaacttcttgacgagcaagaacaagaggatgaagaagccagcactggg
tctcatctcaagctcatagtagatgccttcctccagcagttacccaactgcgtcaaccgt
gatctgatagacaaggcagcgatggacttttgcatgaacatgaacacgaaagcaaatagg
aagaagttggtacgggcgctctttatagttcccagacaaaggttggatttgctaccattt
tatgcaagattggttgctacattgcatccctgcatgtctgatgtagcagaggatctttgt
tccatgctgaggggggatttcagatttcatgtacgaaaaaaggaccagatcaatattgaa
acaaagaacaaaactgttcgttttattggagaactcactaagtttaagatgttcacaaaa
aatgatacgctgcattgtttaaagatgcttctatcagacttttcccatcaccatattgaa
atggcatgtaccctactggaaacatgtggaagatttcttttcagatctccagaatctcac
ctgagaaccagtgtacttttggaacaaatgatgagaaagaaacaagcaatgcatcttgat
gcaagatatgtcacaatggtggagaatgcatattactactgcaacccacctccagctgaa
aaaacagtgaaaaagaaacgtcctcctctccaggaatatgtccggaagcttttgtacaaa
gatctctccaaggttaccaccgagaaggttttgagacagatgagaaagttgccttggcag
gatcaggaagtgaaagactatgtgatttgttgtatgataaacatctggaacgtgaaatac
aacagcattcactgtgtagccaacctcttagcaggactagtgctctaccaggaagatgtt
ggcatccatgttgtggatggagttttagaagatattcgattaggaatggaggttaatcaa
cctaagtttaatcagagacgtatcagcagtgccaagttcttaggggaactttataattac
agaatggtggaatcggccgttatttttagaactctttattcttttacttcatttggtgtt
aactctgatggctctccaagttcactggaccctcctgagcaccttttcaggattagactg
gtgtgcactattttggatacctgtggccagtactttgacagaggttccagtaaacgaaaa
ctcgattgcttccttgtgtattttcagcgttatgtttggtggaagaaaagtttggaggtt
tggacaaaagaccatccatttcctattgacatagattacatgatcagtgacacactagaa
ctgctaagaccaaagatcaaactctgtaattctctggaagaatccatcaggcaggtacac
gacttggaacgagaattcttaataaaactaggcctcgtaaatgacaaagactctaaagat
tctatgacagaaggagaaaatcttgaagaagatgaagaagaagaagaaggaggagctgaa
acagaggaacaatctggaaatgaaagtgaagtgaatgagccagaggaagaggagggttct
gataatgatgatgatgaaggggaggaggaagaggaagagaatacagattatctcacggat
tcaaataaagagaatgaaactgatgaagaaaatactgaggtaatgattaaaggaggtgga
ctgaaacatgtaccttgtgtagaagatgaggacttcattcaagctctggataaaatgatg
ctagaaaaccttcagcaacgaagtggcgaatctgttaaagtgcaccaacttgatgttgcc
attcccttgcacctcaaaagccagctgaggaaaggacccccacttggtggtggggaggga
gagacagagtctgcagacacaatgccatttgttatgttaacccgaaaaggcaataagcaa
cagtttaaaatccttaatgtacccatgtcttcccaacttgctgcaaatcactggaaccag
caacaagcagaacaagaagagaggatgagaatgaaaaagctcacactagatatcaatgaa
cggcaagaacaagaagattatcaagagatgctacagtctcttgcccaacgcccagctcca
gcaaacaccaatcgggagcggcggcctcgttaccaacacccaaagggagcgcctaatgcg
gatctaatctttaagactggtgggaggagacgttga
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