Bdellovibrio bacteriovorus W: BDW_07900
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Entry
BDW_07900 CDS
T03036
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bbw
Bdellovibrio bacteriovorus W
Pathway
bbw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bbw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BDW_07900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbw03400
]
BDW_07900
Enzymes [BR:
bbw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BDW_07900
DNA repair and recombination proteins [BR:
bbw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BDW_07900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AHI06080
LinkDB
All DBs
Position
complement(1640876..1643269)
Genome browser
AA seq
797 aa
AA seq
DB search
MSRPEYLKKRNFKVTPEPSGGRSRKTIKKTSKDRIFVVQEHHASHLHWDFRLEAYGTLKS
WAVPKGPSTVIGEKRLAVEVEDHPVSYADFQGRIPKGQYGAGIVKTWDRGTWTPPKDLTK
AFTKGHLEFELHGKKLKGKYHLIRTDRQSGNKAQWLLMKGKEDAVPSQAKKSTVKKAKEL
GRQQGFLKEVSPQLASLVKALPIGEAWYYEIKLDGYRTLALKNRSTVLQTRGGLDWTEKY
QTFADELDNSVQKNFIVDGEIIVRDSQGRSDFSLLKEALSRNDQAAMEYCLFDILYLNGR
SLIHLPLSERKSLLEGFLKENNFKNITYSEHQVGNGKTLFAQTCALGLEGLIAKDPEHTY
EMKRTRSWLKIKCDQRQEFIIIGYTDPQGSRVGFGALLLGYYEGKELRFAGKVGTGFNFK
DLQSLKKKLKSLEIEKTPLKNLPRLRDVHWVEPKLVCEVEYREWREGTSLRHPSFIGLRE
DKKAKEISREKSLDPETIKLEEANSVTLSSPERVLYEFPKVFKKDVFSYYEKAAERFLKY
SAKRPLAILRCQQTAQARCFFQKHLENTKADEVFESQVRDQKFMYIESPQGLLQLVQSGA
IEFHAWQSTLDEPNSPSEIVFDLDPDESLSWRKLQFGVLSLRDLLLELGLYSQVKSTGGK
GLHVHVFLKSGYSFEVIKEFARSVCLLLEKESPRRYTVNMSKARREGKIFLDYLRNGFGA
TAIAPYSLRAGQKPTVALPLAWKEIEKMSRKKVFLFSEALERIQEKDVWEGHSQPQRIRI
LESQDIEMFRENIDSSV
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacccgagtatcttaaaaaaagaaattttaaagtgacaccagaacccagcgga
ggtcgctcaaggaaaaccatcaagaaaacctcgaaggatcgaatctttgttgtgcaggag
catcacgccagccatcttcattgggactttcgactcgaggcttatgggactttgaagagt
tgggcagtgccaaagggaccatcgaccgttattggtgaaaaaagacttgccgtggaagtg
gaagaccatcccgtaagctatgctgattttcaggggagaatacctaaagggcagtacggg
gccggaattgtgaagacatgggatcggggaacatggacaccacccaaagatttgacgaaa
gcctttacaaaggggcacctcgagtttgagttgcatgggaaaaaacttaaaggcaagtat
catctcattcgcaccgatcgacaaagtggtaacaaagcccaatggcttttgatgaagggg
aaagaagacgcggtcccaagtcaagcgaagaaatctacagtaaagaaggcgaaagagtta
ggacggcaacaaggttttctaaaagaagtcagtcctcaattagcaagtcttgtgaaagcg
ttgccaatcggagaagcatggtactacgaaataaagctcgatgggtatcgaacgctcgca
cttaagaatcgctcaacggttttgcaaactcgtggaggtcttgattggacagagaagtat
caaacttttgcggatgaattagataatagtgttcagaaaaactttatcgtggatggtgaa
atcattgttcgggattcacaaggaagaagtgacttctctcttttaaaggaagccctttca
agaaatgaccaagcagcgatggagtattgcctttttgatattttatatctcaatggaaga
agtcttattcatcttccactgtctgaaagaaaatctctacttgaaggatttttaaaagaa
aacaatttcaagaacattacctatagcgaacatcaggtcggcaacggaaaaacactcttt
gcgcaaacttgtgccttggggcttgagggattgatcgcgaaagatccagagcacacctac
gaaatgaaaagaacccgatcttggcttaaaataaagtgcgatcagcgacaagaattcatc
attattggatacactgatcctcagggcagtcgcgtggggtttggcgctttgctattaggc
tactatgaggggaaagagcttcgtttcgcggggaaagtggggacggggtttaactttaag
gaccttcagagtctaaaaaagaagttaaaatctttagagatagaaaagacgcctcttaag
aacctaccgcgactgcgagatgtccattgggtggaaccaaagcttgtttgcgaggtggag
tacagggaatggcgcgagggcacgtctttaaggcatccctcttttataggtttaagagag
gataaaaaagcgaaagaaatttctcgagaaaaatcattagatcctgaaactataaaattg
gaagaggcgaactctgtgactctctccagtccagagagggttctttatgaatttcctaaa
gtttttaagaaggatgttttttcttattatgaaaaggccgcagagcgttttttaaagtac
tcagctaaacggcctcttgcgatattaagatgccagcaaaccgctcaagctcgctgcttt
tttcaaaagcatctagaaaatacaaaagcggacgaagtttttgaatcccaagtgcgagat
cagaaatttatgtatattgaaagtccccaagggcttttacaacttgttcaatcaggggcc
attgagttccatgcttggcaaagtacattggatgaaccaaattctccgagcgaaatagtt
ttcgatctagacccagacgagtctctgtcttggagaaaactgcaatttggagttttgtcc
ctgagagatttgcttttagaactcggcctatactcccaagtcaaatcgaccggtggtaaa
gggcttcacgttcatgttttcttaaagtcgggatatagctttgaggttattaaagaattt
gcgcgcagtgtttgccttcttttagagaaagaaagcccacggcgctacacagtgaatatg
tccaaggctcgcagggaagggaaaatctttttagactatcttcgcaatggatttggtgcg
accgcgattgctccatattctttaagggccggccaaaagcccacagtggctttgcctctt
gcgtggaaggagattgaaaagatgtcgcgaaaaaaagttttcttattttcggaggcccta
gaaaggattcaagagaaggatgtttgggaaggacatagtcaaccgcagagaattcggatt
ttggaaagtcaggatattgaaatgtttcgagagaatatagattcaagtgtctga
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