Bdellovibrio bacteriovorus W: BDW_08030
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Entry
BDW_08030 CDS
T03036
Name
(GenBank) hypothetical protein
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
bbw
Bdellovibrio bacteriovorus W
Pathway
bbw03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bbw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BDW_08030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbw03400
]
BDW_08030
Enzymes [BR:
bbw01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
BDW_08030
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BDW_08030
DNA repair and recombination proteins [BR:
bbw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BDW_08030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
zinc-ribbons_6
Ribosomal_S13
Zn_Tnp_IS1595
Motif
Other DBs
NCBI-ProteinID:
AHI06106
LinkDB
All DBs
Position
complement(1672873..1673685)
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AA seq
270 aa
AA seq
DB search
MPELPEVEVVRQGLEKILESKPVLKKVELKRPDLREPIPIKQIRTLEGLPITGVERRAKY
LILWTPKGGMLSHLGMTGTWRVAPVGDERLHDHIYLHFENGMRLAYRDPRRFGYFDYIER
LDSHPKLDHLGPEPLDRVFNGSSLWESLRGKKVALKVALMDQKVVVGVGNIYASEALYAA
GVKPQLAAEKLSKERAHQVVAEIKRILKLSIRRGGSSISDFAQASGDSGYFQNEFKVYGR
EGELCPTCKGTIKAAVMGGRNTFWCPRCQK
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacttcccgaagttgaagtggtccgtcaggggcttgaaaaaatcctcgaatcc
aaacccgtcctgaaaaaggtggagctgaagcggcctgatttgcgggagccaattcccata
aagcagattcgtaccttagaggggttacccatcacaggggttgagcggcgcgcaaagtat
ttgatcttgtggactcccaaaggagggatgctttcgcatttgggcatgacgggaacatgg
cgcgttgcaccagtaggggatgagcgacttcatgatcacatctatcttcattttgaaaat
gggatgaggcttgcgtatcgggacccgcgaagatttggctattttgactatattgaaagg
ttggattctcaccctaagttggatcacttggggcccgagccattggatcgtgtctttaat
ggatcgagtttatgggaaagtctgcgtggtaaaaaagtcgcattgaaggtcgctttgatg
gaccaaaaggttgttgtcggagtcgggaacatttacgccagcgaagctctttatgcagca
ggggtaaaaccgcagcttgccgcggaaaagctatccaaagaacgggctcatcaggttgtt
gcagaaataaaacgtattttgaagttatccattcgtcggggaggatcttccatcagtgac
tttgcacaagcctctggggattcgggatattttcagaatgagtttaaggtttatggtcgc
gaaggggagttgtgtccgacctgtaaaggtacgatcaaggcggcagtgatgggtggacga
aacaccttctggtgcccgcgttgccaaaaataa
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