Bordetella bronchiseptica S798: BBS798_2675
Help
Entry
BBS798_2675 CDS
T03637
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bbx
Bordetella bronchiseptica S798
Pathway
bbx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bbx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BBS798_2675 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbx03400
]
BBS798_2675 (ligD)
Enzymes [BR:
bbx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BBS798_2675 (ligD)
DNA repair and recombination proteins [BR:
bbx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BBS798_2675 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BAO69400
LinkDB
All DBs
Position
2896908..2899370
Genome browser
AA seq
820 aa
AA seq
DB search
MTQPLRQYREKRDFRATAEPAGAARRPRAAARASEGLSFVIQRHQARRLHYDFRLEIDGV
LVSWAVPKGPSRDPSVKRLAVHVEDHPLEYGGFSGDIPKGQYGAGHVDIWDSGVWIPRGD
PRQGLRRGKLHFALRGRRLAGDWVLVRMSGEQDQWLLRKEDDEAAVPGDDAERAPATPPP
APEHAPAATPRGRRAAMPRTLAPQLATLVDSPPHGPGWSYEVKYDGYRILAACSAGGVRL
VSRGNEDWQARMAPLARALGALKLGRGWLDGEVVVLDERGVADFQLLQNALDGQAEGLVF
VAFDLPFWNGEDLRALPLQARQERLEDLLREVPEDAPLMLTQRLPVADDTEGKAAWNEAC
RLSLEGLICKRLDAPYRSGRSQGWLKLKCRPRQEFVIGGYTEPAGARRHLGALLVGLRQG
RQLRYAGRVGTGFGAATLRTLGQRLAALRQDAKPFSGDVPRGRGDAAIHWVSPELVAEVN
YAGITRDGLLRQASFAGLRADKPASEVRGEVAARPPATKAATPSRRAGDGRAEVAGVRIS
HPDRLAYREPDYTKLQLAEYYAAIGPHILPHLRQRRVALLCCPDGAGTTCFFQKHLSQSL
PAGVRRDGGHLVIESLPGLIALVQYGAIEFHTWGADTRHPDTPDRITLDLDPGPGVAWPA
IVEGAQMARLLMQEVGLEPFLKTTGGKGLHLVAPLRPTQPWDTVKDFARALARQLAVALP
DRFTANMAKARRERRIFVDYLRNGNGATAVAAFSARARDGAPVSMPLSWDALDAGDDLRG
ARWNIANALEQARRKPDPWADYAASRRTLGSRMQARLPRD
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgacacagccactgcggcagtaccgcgagaagcgcgatttccgcgccaccgccgaaccg
gccggcgccgcccggcgcccgcgcgcggccgcccgcgcaagcgaaggcctgtccttcgtc
atccagcgccatcaggcgcgccgcctgcattacgatttccgtctcgaaatcgacggcgtg
ctggtgagctgggcggtgcccaagggcccgtcgcgcgatccttccgtcaagcgcctggcc
gtgcatgtggaagaccatccgctcgagtatggcggattctccggcgacattcccaagggc
cagtacggcgccggacatgtcgacatctgggacagcggcgtctggatcccgcgcggcgat
ccgcgccagggcttgcggcgcggcaagctgcatttcgcgttgcgcggccggcgtcttgcc
ggcgactgggtcctggtgcgcatgagcggcgagcaggaccaatggctgctgcgcaaggaa
gacgacgaggcggcggtgccgggcgatgacgccgaacgcgcgccggccaccccgccgccc
gccccggagcacgccccggcggccacgccgcgcgggcgccgcgccgcgatgccgcgcacg
ttggcgccccagctggccacgctggtggacagcccgccgcatgggccgggctggtcgtac
gaggtcaagtacgacggctaccgcatcctggcggcctgctcggccggcggcgtgcgcctg
gtcagccgcggcaacgaggattggcaggctcgcatggcgccgctggcgcgcgcgctgggc
gcgctgaagctggggcgcggctggctcgacggcgaggtcgtcgtgctcgacgaacgcggc
gtggccgatttccagctgttgcagaatgcgctggacggccaggccgaagggctggtgttc
gtcgcgttcgaccttcccttctggaatggcgaggacctgcgcgccctgcccctgcaagcc
aggcaagagcggctcgaggacctgctgcgggaggtgcccgaggacgcgccgctgatgctc
acgcaacgcctgccggtggccgacgacaccgaaggcaaggcggcctggaacgaagcctgc
cggctgagcctggaaggcctgatctgcaagcgcctggacgcgccttaccggtccggccgc
tcgcagggctggctgaagctgaagtgccgcccgcgccaggaattcgtcatcggcggctat
accgaaccggccggcgcgcgccgccacctgggcgccttgctggtgggcctgcgccaaggc
cgccaattgcgctatgcgggccgcgtggggacgggcttcggcgcggccacgttgcgcacg
ctgggccagcggctggcggcgctgcgccaggatgccaagccgttttcgggcgacgtgccg
cgcggccgcggcgacgccgccatacattgggtcagccccgagctggtggccgaagtgaat
tatgcgggcatcacgcgcgacggcctgctgcgccaggcttcgtttgccggcctgcgcgcc
gacaagcccgccagcgaagtgcgcggcgaggtggccgcgcggccgccggcgaccaaggcc
gccacgccgtcgcgccgcgccggcgatggccgcgccgaggtggccggcgtgcgtatctcg
catccggaccggctggcctatcgcgagcccgactacaccaagttgcagctggccgagtac
tacgcggccatcggcccgcatatcctgccgcacctgcgccagcgccgcgtggccctgttg
tgctgtcccgacggcgccggcacgacctgcttcttccagaagcacctgagccagtcgctg
cctgccggcgtgcggcgcgacggcgggcacctggtgatcgaatcgctgcccggcctgatc
gcgctggtgcagtatggcgccatcgagttccatacctggggcgccgatacccgccatccc
gacacgcccgaccggatcaccctggacctggaccccggccccggcgtggcgtggccggcc
attgtcgaaggcgcgcagatggcccgcctgctgatgcaggaagtcgggctggaaccgttt
ctcaagacgaccggcggcaagggcctgcacctggtggcgccgctgcggcccacgcagccc
tgggacacggtcaaggatttcgcgcgcgcgctggcgcgccagctggccgtggccctgccc
gaccggttcaccgccaacatggccaaggcccggcgcgaacggcgcatcttcgtggactac
ctgcgcaacggcaacggcgccaccgcggtggccgcgttctcggcgcgggcgcgcgacggc
gcgcccgtttccatgccgctgtcctgggacgcgctggacgccggcgacgatttgcgcggc
gcgcgctggaacatcgccaacgcgctggagcaggcccggcgcaagcccgacccctgggcc
gattatgccgccagccggcgcacgctgggttcgcgcatgcaggcgcggctgccgcgcgat
tga
DBGET
integrated database retrieval system
