Paraburkholderia caribensis: K788_0004726
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Entry
K788_0004726 CDS
T04141
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bcai
Paraburkholderia caribensis
Pathway
bcai03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bcai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
K788_0004726
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcai03400
]
K788_0004726
Enzymes [BR:
bcai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
K788_0004726
DNA repair and recombination proteins [BR:
bcai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
K788_0004726
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ALL69058
UniProt:
A0A0P0RK64
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All DBs
Position
2:3025844..3027601
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AA seq
585 aa
AA seq
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MLARVDKGRVRLFTGGGHDWTKKLASLAEEVENLSVSSGWLDGEIVVLKDGLPDFGALQH
AIDGGAGQNIVYFLFDMPYFDGKDLRNVPLWMRRALLARLLEGERERIRFSPDFEALPAQ
VFEAAAGLGLEGLMLKRRDARYESGRTQTWLKAKCRLRQELVICGFTARGGKEGEVGSLL
LGYYEGNKGRRLHDAGSVGTGWDGRTGRDLWKRLVSLEIDSTPFDIVVTKSRRWSRRAEG
SERWVRPELVAEVEFAEWTADGIVRQASFKGLRVDKRARLVAHEGGQTLTRAEAVSQLRV
THPERIIDPTSGVTKLELARYYESVAAWMLPHLKDRPVAMVRAPDGIEGEQFFQKHVERT
GMPGIKAHDRKLWPNHPPLLTIDTISALMSAAQMNAVEFHTWNSTVRRLNKPDRVIFDLD
PGEGVKWPYVQEAALLVQTLLQELGLQAWLKTSGGKGLHVVVPLTPRLDYDAVKGFSKAF
VRHLAKTIPERFSATSGASNRIGKVYVDYLRNGMAQTTAAAFSARARRGMGVSMPVSWEQ
LPELKSGAQWTVQTAREYLSFEPRDPWAAYWTAAQPLASAIRRLK
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgctcgcgcgggtcgacaagggacgcgtgcgactgttcacgggcggcggacacgactgg
acgaagaagcttgcgagcctggccgaagaggtcgaaaacctttccgtgtcgagcggatgg
ctggatggggaaattgttgtgctgaaggacggactgccggatttcggtgccctgcagcac
gcgatcgacggcggtgcaggccagaacattgtctatttcctgttcgacatgccgtacttc
gacggcaaggatctgcgtaatgttccgctgtggatgcggcgggcgctgcttgccaggtta
ctcgaaggcgagcgggagcgcatacggttcagcccggattttgaggcgctacccgcccag
gtattcgaggccgccgccgggctgggactcgaaggtctgatgctcaagcgccgggacgcg
cggtacgagtcgggacggacacagacgtggttgaaggccaaatgccgtctgcggcaggaa
ctggttatctgtggcttcacggcgcgcggcggcaaggagggcgaagtgggcagtctgctg
cttggctactacgagggtaacaagggccgcaggcttcacgacgcaggcagtgtgggtaca
ggctgggatggtcgcacgggtcgggatctgtggaagcgacttgtatcgctcgaaatagat
tcaacaccgttcgacattgtcgtcacgaagtcccggcgttggtcgcggcgcgcggagggc
agcgagcggtgggtgcgccccgaactggtcgcggaagtcgaattcgccgagtggacggca
gacgggatcgtgcggcaggcgtcgttcaaggggttgcgagtcgacaaacgggcgcgtctg
gtagcccacgaaggcggccagacgctcacacgtgcagaggccgtgtcccagctcagggtc
acacacccggagcggatcatcgacccgacgagcggcgtgacgaagctcgaactcgcgcgg
tactacgagagcgtcgccgcgtggatgttgccgcatctcaaggaccgacctgtggccatg
gtgcgtgcgccggacggcatcgagggcgagcagtttttccagaaacatgtcgagcgaaca
ggcatgccggggatcaaggcacacgaccgaaagctctggccgaatcacccgccgttgctg
accatcgataccataagcgcgctgatgtcggcggcccagatgaacgccgtggaatttcac
acgtggaactccaccgtccgccgacttaataaacccgaccgggtcatcttcgatctcgat
cccggcgagggcgtgaaatggccttatgttcaggaggcggcactactcgtccagacactg
ctccaggaattggggctgcaggcctggctgaagacgagcggcggcaaggggctgcacgtc
gtcgtcccgctgacgccgaggctcgactacgacgcggtgaaaggcttctcgaaggcgttc
gtccggcatcttgcgaagacgattcctgagcgtttttcggcgacatcgggtgcatcgaac
cgcatcggcaaggtgtatgtcgattatcttcgaaacgggatggcccagaccacggccgcc
gcgttttccgcgcgggcgcgccgcgggatgggcgtgtcgatgccggtgtcatgggagcaa
ctgcccgaactcaagagcggcgcacagtggaccgtccagacggcgcgggagtatctcagc
ttcgagccgcgggatccttgggccgcttactggaccgccgcgcaaccgttggcatctgcg
atcaggcgcctgaaatga
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