Paraburkholderia caribensis: K788_0007984
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Entry
K788_0007984 CDS
T04141
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bcai
Paraburkholderia caribensis
Pathway
bcai03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bcai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
K788_0007984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcai03400
]
K788_0007984
Enzymes [BR:
bcai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
K788_0007984
DNA repair and recombination proteins [BR:
bcai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
K788_0007984
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ALL65140
UniProt:
A0A0P0R9T9
LinkDB
All DBs
Position
1:2487695..2490580
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AA seq
961 aa
AA seq
DB search
MADKLDTYQRKRRFDKTPEPSGTAARAKGAKGAKGAKDANTAARSTAKPHSLSFVIQEHD
ARRLHYDFRLELDGTLKSWAVPKGPSLDPSVKRLAVHVEDHPLEYGSFEGSIPEGNYGAG
SVIVWDRGTWEPTGGEAGARDAYQAGKLKFHLNGEKLHGGWTLVRSHMRGSGDKEQWLLI
KERDDDARSEADFDVLDERQGSVLSDAPGARGGTSGKSVSSKPVADKPKSQAERVNASIK
ATKAAASRKAKGTPADRPDIVATRNAASLRELAGHPSIEGAVEAKLPAALKPQLATLVDN
APTGDDWVYEIKFDGYRVLVRIDHASKDSVKIFTRAGNDWTTKFSKQVKAIARIGVDCAW
LDGEAVVLDSNGVPSFQALQNAFDAHRPQDITLYLFDLPYLNGYDLRGVPLEQRRAILHA
LLDSVDDDTLRFSEDFGFDAGQLLKSACDMQLEGIIGKRRDSHYVSGRSPAWIKLKCRRR
QEFVIGGYSEPAGSREAFGALLLGVYDTKGKLQYAGRVGTGFDAARLRSIKKALDARETQ
TMPFASEPRERSRTPVHWVKPELVAECNFAEWTSDGIVRQASFVGLRDDKPARQIVHEAP
DKGADVQQMTEEMNAAQAKTSTAKKRASKTEDVEPTPATNRAKTSGAASRDKVVAKSTSK
AATATVSGVRISHPDRVIDKSTGARKIELAEYYASVASWMLPFLKDRPVALVRAPEDIGG
ELFFQKHSQKLAIPNITQHPGLDPDHPPLLTIESEAALVGAAQMGTIELHTWNAVAANIE
KPDRMVFDLDPGPALGWKRMIEAAQLTRELLEELGLASFCKTSGGKGLHVVVPIAKQLGW
DEVKAFTQAVAQHMATALPKHFAAKMGAQNRKGKIFVDYLRNNRGSSTVCAYSLRARPGL
GVSVPLTWDEVPGTTAGDQWNIANLHERLDALKSDPWADYAKTKQRITAAMRRRLDMAEH
D
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaagctcgatacctatcagcgcaagcgccgcttcgataaaaccccggagccg
tcggggacggctgcgcgcgcgaagggtgcaaagggtgcaaagggtgcaaaggatgcaaac
acagccgcaagaagcaccgcgaagccgcacagcttgtcgttcgtaatccaggaacacgac
gcgcgacgtctgcattacgacttccgtctcgaactcgacggcacgctcaaatcctgggcc
gtgccgaaagggccgagcctcgatccgtccgtcaagcggcttgccgtgcatgtcgaagat
catccgctcgaatacggttcgttcgaaggttcgattcccgaaggcaactacggcgcgggc
tccgtgatcgtatgggatcgcggcacgtgggaaccgacgggcggcgaagcgggcgcacgt
gacgcgtatcaggcaggcaagctcaagttccacctgaatggcgagaagctgcacggcggc
tggacgctggtgcgcagccacatgcgcggcagcggcgacaaggagcagtggctgctcatc
aaggaacgcgacgacgacgcgcgcagcgaagccgatttcgacgtgctcgacgagcggcag
ggcagcgtgctgtcggatgcgccgggcgcgcgcggcggcacgagcggcaaaagcgtctcc
agcaagcccgtcgctgacaagccgaagagtcaagcggaacgcgtcaacgcatcgatcaag
gcaacgaaggcggcggcatcgcgcaaggccaaaggcactcccgccgaccgccccgacatc
gtcgcgacgcgcaacgcggcatcgttgcgcgaactggccggtcatccgtcgatagaaggc
gccgtcgaggcgaagctccccgctgcgctcaagcctcaactggcgacgctcgtcgacaac
gcgcccaccggcgacgattgggtctacgagatcaagttcgacggttatcgcgtgctggtg
cgcatcgatcacgcgtcgaaggattccgtgaaaatcttcacgcgcgcaggcaacgactgg
accacgaagttcagcaagcaggtcaaggcgatcgcgcgcatcggcgtggactgcgcgtgg
ctcgacggcgaggcggtcgtgctcgacagcaacggcgtgccgagcttccaggcgctgcaa
aacgccttcgacgcgcaccggccgcaggacatcaccttgtatctgttcgacctgccctat
ctgaacggctatgacctgcgcggcgtgccgctcgaacagcgtcgcgcgatcctgcacgcg
ctgctcgatagcgtcgatgacgacacgctgcgcttttccgaagacttcggcttcgacgcc
ggccagttgctgaagagcgcatgcgatatgcagctcgaaggcatcatcggcaagcggcgc
gacagccattacgtatcgggccgctcgcccgcgtggatcaaactcaagtgccggcgccgt
caggaattcgtgatcggcggttattcggaaccggcgggcagccgcgaggcattcggcgcg
ctgctgctgggcgtctacgacacgaagggcaagttgcaatacgcggggcgcgtcggcacg
ggtttcgacgcggccagactgcgctcgatcaagaaggcactcgacgcacgcgaaacacag
acgatgcccttcgccagcgagccgcgcgaacgaagccgcacgcctgtgcattgggtgaag
ccggaactcgtcgccgaatgcaattttgcggaatggacgagtgacggcatcgtgcggcag
gcgtcgtttgtcggcttgcgcgacgacaagcccgccaggcagatcgtccacgaagcgcca
gacaaaggagccgacgtgcaacagatgacggaagagatgaacgccgctcaggcgaagacg
tcgacggcgaaaaagcgcgcgtcgaagaccgaggatgtcgagccgacgcccgcgacaaat
cgtgcgaagacgagcggcgcggcatcgcgagacaaggtggtggcgaaatcgaccagcaag
gccgccacggcgacggtttccggcgtgcgtatctcgcaccccgaccgcgtgatcgacaag
agcacgggcgcgcgcaagatcgagcttgccgaatactacgcgtcggtcgcgtcgtggatg
ctgccgtttctgaaggaccggccggtcgcgctcgtgcgtgcgccggaggatatcggcggc
gagctgttcttccagaagcacagccagaagctcgcaattcccaacatcacgcagcatccg
gggctcgacccggaccatccgccgctgctgaccatcgaaagcgaagcggcgctggtgggc
gctgcgcagatgggcacgatcgaactgcatacgtggaacgcggtggccgcgaatatcgag
aaacccgaccgcatggtgttcgatctcgacccgggcccggcgctcggctggaagcggatg
atcgaagcggcgcagctcacgcgcgaactgctcgaagaactcggcctcgcgtcgttttgc
aagacgagcggcggcaaggggctgcacgtcgtcgtgccgatcgcgaagcaactcggctgg
gacgaggtgaaggcgttcacgcaagccgtcgcgcaacacatggcgacggcgctgccgaag
cactttgccgcgaagatgggtgcgcagaatcgcaagggcaagatttttgtcgactatctg
cgcaacaaccgtggctcgagcaccgtctgcgcgtattcgctgcgcgcgcggccggggctg
ggcgtgtcggtgccgctcacatgggacgaagtgcccggtacgacggcgggcgatcaatgg
aatatcgcgaacctgcacgagcggctcgacgcgctgaaaagcgacccatgggccgactac
gcgaagacgaagcagcgcatcacggccgccatgcggcgcaggctggatatggcggagcac
gattga
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