KEGG   Burkholderia cenocepacia DDS 22E-1: DM39_7047Help
Entry
DM39_7047         CDS       T03308                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bcen  Burkholderia cenocepacia DDS 22E-1
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bcen00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    DM39_7047 (ligD)
Enzymes [BR:bcen01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DM39_7047 (ligD)
DNA repair and recombination proteins [BR:bcen03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     DM39_7047 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
3:972718..975384
Genome map
AA seq 888 aa AA seqDB search
MADKLEPYRRMRRFDATPEPEGAHGRRRAAAGARSKPPARGRQPLRYVIQEHHARRLHYD
FRLELDGTLKSWAVPKGPSVDPSVKRLAVHVEDHPLEYASFEGEIPAGHYGAGSVVVWDE
GTWVPDGGLAGARDGYRAGKLTFRLDGRKLHGGWALVRSGRQEGRQEQWLLIKERDDEAR
DAEGYDVVAQQPGSVHRRAASRPLAPSGIEGAVRAPLPERVAPQLATLVDAPPAHGDWRY
ELKFDGYRILARIAGKGARRHVTLMTREGRDWTAKLRPQRDALAALGVDDAWLDAEAVVL
GEHGLPDFQALQNALGAGRADAVTLFVFDLPYLDGYDLRDAPLTARRALLEPLLADCDPV
RLRFSPDLGDDVATLIANACDTGLEGLIGKRADARYRAGRSPAWIKLKCRRRQEFVIGGY
TEPSGARNGFGALLLGVHEPAPQGTKRRDAGPLRYVGRVGTGFDTRTLDRLAAILRAHER
DAAPFDPPPREWSRTRVHWVEPTLVAECEFAEWTGDGIVRQAAFIALRDDKPAAQIVREV
ARHTATEATMDERNTTDGARDGAQHDGGATRARTRRSTGAQSRAGTPRGEAAPDQVGRVR
ITHPERVVDPQHGTRKIDLAHYWEWVAPWLLPDLAGRPVSLVRAPEDITGELFFQKHADR
REIPYVARHAGLDPGHGPLLTIDSVDALVGAAQMGTVELHTWNAHVSNIERPDRIVFDLD
PDPALPWRAMIDAAQLVRGLLDELGLVSFCKTSGGKGLHVVVPITRHAGWDEVKDFSRAV
AQHVAAALPDRFTATMGPRNRRGKIFIDYLRNGRGASTIAAYSVRARPGMGVSVPIGWDE
VPDTTGGAQWTIDTLYERLEHLARDPWEDYANTRQRITARMRARLATS
NT seq 2667 nt NT seq  +upstreamnt  +downstreamnt
atggccgacaagctcgaaccctatcgccggatgcgccgcttcgacgcgacgccggagccc
gaaggcgcgcacggccggcgccgcgcggcagccggcgcgcggtcgaagccgcccgcgcgc
ggccggcagccgttgcgctacgtgatccaggaacatcacgcgcgccgcctgcattacgac
ttccgtctcgagctcgacggcacgctgaagtcctgggcggtgccgaaagggcccagcgtc
gatccgtcggtgaagcgcctcgcggtgcatgtcgaggatcatccgctcgaatatgcgtcg
ttcgagggcgagatcccggccggccattacggcgccggttcggtcgtcgtctgggacgaa
ggcacgtgggtgccggacggcgggctggccggcgcacgcgacggctatcgtgcgggcaag
ctgacgttccggctcgacggccggaagctgcacggcggctgggcactggtgcgcagcggc
cggcaggaagggcggcaggagcaatggctgctgatcaaggaacgcgacgacgaggcgcgc
gacgcggagggctatgacgtcgtcgcgcagcagccgggcagcgtgcatcggcgcgccgct
tcgcgcccgctcgcgccgtccggcatcgaaggcgcggtgcgcgcgccgctgcccgagcgc
gtcgcgccgcagctcgcgacgctggttgacgcgccgcccgcgcatggcgactggcgctac
gaactgaagttcgacggctaccggatcctcgcgcgcatcgcgggcaagggcgcgcgacgg
cacgtgacgctgatgacgcgcgaagggcgcgactggaccgcgaagctgcggccgcagcgc
gacgcgctcgcggcgctcggcgtcgacgacgcgtggctcgacgccgaggccgtggtgctc
ggcgagcacgggctgcccgatttccaggcgctgcagaacgcgctcggcgcggggcgcgcg
gatgccgtcacgctgttcgtgttcgacctgccctatctcgacggctacgacctgcgcgat
gcgccgctgaccgcgcgccgcgcgctgctcgaaccgctgctcgccgactgcgacccggtg
cggctgcgcttttcgcccgatctcggcgacgacgtcgcgacgctgatcgcgaacgcgtgc
gacacgggcctcgaaggcctgatcggcaagcgcgcggacgcgcgctatcgcgcggggcgc
tcgccggcgtggatcaagctgaagtgccggcgccggcaggaattcgtgatcggcggctat
accgagccgtcgggcgcccgcaatggtttcggcgcgctgctgctcggcgtgcacgagccg
gcgccgcagggcacgaagcgacgcgacgccgggccgctgcgctatgtcggccgcgtcggc
accggcttcgacacgcgcacgctcgaccggctggccgcgatcctgcgcgcgcacgaacgc
gacgcggcgccgttcgatccgccgccgcgcgagtggtcgcgcacgcgcgtgcactgggtc
gagccgacgctcgtcgccgaatgcgagttcgccgaatggaccggcgacggcatcgtgcgc
caggcagcgttcattgcgctgcgcgacgacaagccggcggcgcagatcgtcagggaggtt
gcacgacacaccgcaacggaggcaacgatggacgagcgcaacacgacggatggcgcgcgc
gacggcgcgcagcacgacggcggcgcgacgcgcgcgcgaacccgacgcagcacgggggcg
cagtcgcgcgccggcacgccccgcggcgaggccgcgcccgatcaggtcggccgcgtgcgc
atcacccatcccgagcgggtggtcgatccgcagcacggcacccgcaagatcgatctcgcg
cactactgggaatgggtcgcgccgtggctgctgcccgatctcgcggggcggccggtgtcg
ctggtgcgcgcgccggaggacatcaccggcgagctgttcttccagaagcatgcggatcgc
cgcgagattccgtacgtcgcacggcatgccggcctcgatccgggtcacgggccgctgctg
acgatcgacagcgtcgacgcgctggtcggcgccgcgcagatgggtacggtcgaactgcat
acgtggaacgcgcacgtgtccaatatcgagcgtccggaccggatcgtgttcgacctcgat
cccgatcccgcgctgccgtggcgcgcgatgatcgatgccgcgcagctcgtgcgcggcctg
ctcgacgaactcgggctcgtgtcgttctgcaagacgagcggcggcaaggggctgcacgtg
gtcgtgccgatcacgcggcacgcgggctgggacgaggtgaaggacttctcgcgcgcggtc
gcgcagcatgtcgcggcggcgctgcccgaccgcttcaccgcgacgatggggccgcgcaac
cggcgcggcaagatcttcatcgactacctgcgcaacgggcgcggcgcgagcacgattgcg
gcctactcggtgcgcgcgcggcccggcatgggcgtgtcggtgccgatcggctgggacgag
gtgcccgacaccaccggcggcgcgcagtggacgatcgacacgctgtacgaacgactcgaa
cacctcgcgcgcgatccgtgggaagactacgcgaacacgcggcagcggatcaccgcgcgc
atgcgcgcgcggcttgcgacatcgtga

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