Burkholderia cenocepacia DWS 37E-2: DM40_5175 Help Entry DM40_5175         CDS       T03488                                  Symbol ligD Name (GenBank) DNA ligase D   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism bcew  Burkholderia cenocepacia DWS 37E-2 Pathway bcew03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:bcew00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     DM40_5175 (ligD)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:bcew03400]     DM40_5175 (ligD) Enzymes [BR:bcew01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      DM40_5175 (ligD) DNA repair and recombination proteins [BR:bcew03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      DM40_5175 (ligD) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S Menin Motif Other DBs NCBI-ProteinID:  AIO37986 UniProt:  A0AA86FDH1 LinkDB All DBs Position 3:complement(180997..183870) Genome browser AA seq 957 aa AA seqDB search MAGKLDPYRRKRHFDATPEPEGAHGRRRTKAAAKPDARAAARKPSPLRFVIQEHHARRLH YDFRLELDGTLKSWAVPKGPSFDPAVKRLAVHVEDHPLEYASFEGEIPAGHYGAGSVVVW DEGTWTPDGGLAHAREGYRAGKLTFRLDGHKLHGGWALVRSGRQEGRQEQWLLIKERDDD ARSADEFDVVGERPGSVHDGGASAASAGADGSEKRTRGSPRGRNGKAGTDGADGKSDAAP ARKRGTRAGRREDGRDRDAGADGKRPAGPSAVDGAVRAPLPERVAPQLATLVDAPPTQDG WCYELKFDGYRMLARISGKGTRRRVTLMTREGRDWTAKLGAQRDALAALDVDEAWLDGEA VVLGPNGLPSFQALQNALGAGRSDEITLFVFDLPYLDGYDLRDAPLTARRALLEPLLADS DPARLRFSPDLGEDVASLIASACDTGLEGLIGKRADSRYRAGRSPAWIKLKCRRRQEFVI GGYTEPSGSRSGFGALLLGVHEPSGSGKRSRGPGPLRYVGRVGTGFDTRMLDKLAAILRK HERATTPFDPPPRERSRTPVHWIEPTLVAECEFAEWTGDGIVRQAAFIALREDKPASQIV REVPRHTETAEQEVAMDQRETTDDGKRKPASRAARDADDSKPNARTRTPSRAATGAEEVG GPTQLGRVRITHPDRVIDPHSGTRKIDLARYWQWVAPWLLRDLKGRPVSLVRAPGDITGE LFFQKHAERREIPFVTQHEGLDPGHGPLLSLDSVDALLGAAQMGTIELHTWNAHASNIER PDRIVFDLDPDPALPWSTMIEAAQLVRGLLDELGLVSFCKTSGGKGLHVVVPITRHMGWD DVKDFSRAVAQHVAGALPDRFTATMGPRHRRGKIFIDYLRNGRGASTIAAYSVRARPGMG VSVPLRWDEVPDTTGGNQWTIDTLHERVDRLKRDPWEGYDDTRQRITAQMRARLGRS NT seq 2874 nt NT seq  +upstreamnt  +downstreamnt atggccggcaagctcgatccgtatcgccgcaaacgccacttcgacgcgacgccggagccc gagggcgcgcacgggcgacgccgcacgaaagcggccgcgaagccagacgcgcgagccgct gcgcgcaagcctagcccgctgcgcttcgtaatccaggaacaccacgcgcggcggctgcat tatgacttccggctcgaactcgacggcacgctgaagtcgtgggccgtgccgaaagggccg agcttcgatccggccgtgaagcgtctggcggtgcacgtcgaagaccatccgctcgaatac gcatcgttcgaaggcgagattcccgccggacattacggcgccggctcggtcgtcgtgtgg gacgaaggcacgtggacgcccgacggcggcctcgcgcatgcgcgcgaaggctatcgcgcg ggcaagctgacgttccggctcgacggccacaagctgcacggcggctgggcgctcgtgcgc agcggccggcaggaagggcggcaggagcagtggctgctgatcaaggagcgcgacgacgac gcgcgcagcgcggacgaattcgacgttgtcggcgagcgcccaggcagcgtgcacgacggt ggcgcgtccgcggcgagtgcaggcgccgacggcagcgagaagcgcacgcgcggctcgccg cgcggccggaacggcaaggcgggcacggacggcgcggacggcaagtccgacgccgccccc gcgcgaaagcgcggtacgcgcgccggtcggcgcgaagacggccgcgatcgcgacgccggc gccgacgggaaacggcccgccgggccgtccgcggtcgacggcgcggtgcgtgcgccgctg ccggagcgcgtcgcgccgcaactcgcgacgctggtcgatgcaccgccgacgcaggacggc tggtgctacgaactgaagttcgacggttaccggatgctggcgcgcatttcggggaagggc acgcggcggcgcgtgacgctgatgacgcgcgagggccgcgactggaccgcgaagctgggc gcgcagcgcgacgcgctcgcggcgctcgacgtcgacgaagcatggctcgacggcgaggct gtcgtgctcggtccgaacggcctgcccagcttccaggcgctgcagaatgcgctcggcgcc ggacgctcggacgagatcacgctgttcgtattcgatctgccctatctcgacggttacgac ttgcgcgacgcgccgctcaccgcgcgccgcgcattgctcgaaccgttgctcgccgacagc gacccggcgcggctgcgtttctcgcccgatctcggcgaagacgtcgcgtcactcatcgcg agcgcgtgcgacacgggcctcgaaggcctgatcggcaagcgcgcggactcgcgctatcgc gccggccgttcgcccgcatggatcaagctcaaatgccggcgcaggcaggagttcgtgatc ggcggctacaccgagccgtcgggcagccgcagcggcttcggcgcgttgctgctcggcgtg cacgaaccgtcgggcagcggcaagcgctcgcgcgggccggggccgctgcgctacgtcggc cgggtcggcacgggcttcgatacgcggatgctcgacaagctcgcggcgatcctgcgcaag cacgagcgcgcgacgacgccgttcgatccgccgccgcgcgagcgctcgcgcacgccggtg cactggatcgagccgacgctcgtcgccgaatgcgaattcgccgaatggaccggtgacggc atcgtgcggcaggccgcgttcatcgcgctgcgcgaagacaagccggcgtcgcaaatcgtg cgcgaagtgccgaggcatacggaaaccgcggaacaggaggtagcgatggatcagcgtgag accacggatgacggcaagcgcaagcccgcatcgcgcgcggcgcgcgacgcggacgatagc aagcccaacgcacggacgcgcacgccctcgcgcgccgcgaccggcgcggaggaggtcggc ggtcccacccagctcgggcgcgtgcgcatcacccatcccgatcgtgtgatcgacccgcac agcggcacgcgcaagatcgatctcgcgcgttactggcagtgggtcgcgccgtggctgctg cgcgatctgaagggccgcccggtgtcgctggtgcgcgcgccgggcgacatcaccggcgaa ctgttcttccagaagcacgcggagcgccgcgagattccgttcgtcacgcaacacgaaggg ctcgaccccgggcatggtccgctgctgtcgctcgacagtgtcgacgcgctgctcggcgcc gcgcagatgggcacgatcgaactgcacacgtggaacgcgcatgcgtcgaacatcgagcgg ccggaccggatcgtgttcgatctcgatccggatccggcgctgccgtggagcacgatgatc gaggccgcgcagctcgtgcgcgggttgctcgacgagctggggctcgtatcgttctgcaag acgagcggcggcaaggggctgcacgtcgtcgtgccgatcacgcggcacatggggtgggac gacgtgaaggacttctcgcgcgcggtcgcgcagcacgtggccggtgcactgcccgaccgt ttcactgcgacgatggggccgcgtcaccggcgcggcaagatcttcatcgactacctgcgc aacggccgcggcgcgagcacgatcgccgcgtactcggtgcgggcgcggcccggaatgggc gtgtccgtgccgctgcgctgggacgaggtgcccgacacgaccggcggcaaccaatggacg atcgacacgctgcacgaacgcgtcgaccggttgaagcgcgacccgtgggaaggctacgac gacacgcgccagcggatcaccgcgcaaatgcgcgcgcggctgggccgctcgtga

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