Burkholderia cenocepacia HI2424: Bcen2424_6483
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Entry
Bcen2424_6483 CDS
T00415
Name
(GenBank) ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bch
Burkholderia cenocepacia HI2424
Pathway
bch03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Bcen2424_6483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bch03400
]
Bcen2424_6483
Enzymes [BR:
bch01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Bcen2424_6483
DNA repair and recombination proteins [BR:
bch03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Bcen2424_6483
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABK13213
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All DBs
Position
3:695458..698268
Genome browser
AA seq
936 aa
AA seq
DB search
MAGKLDPYRRKRHFGATPEPEGAHGKRRAKPDTQAASKPKAKQPAARARHPLRFVIQEHH
ARRLHYDFRLELDGTLKSWAVPKGPSFDPQVKRLAVHVEDHPLEYASFEGEIPAGHYGAG
SVVVWDEGTWTPDGGVAQAREGYRAGKLTFRLDGEKLHGGWALVRSGRQEGRQEQWLLIK
ERDDDARSADEFDVVGERPGSVHDGAANGAARKRAARRGRSTDADGDVHDAQHASHESHE
SHESHASHRPTDPSQVEGAVRAPLPERVAPQLATLVDAPPTQGGWCYELKFDGYRILARI
AGKGARRRVTLMTREGRDWTAKLRAQRDALAALDVDDAWLDGEAVVLGENGLPDFQALQN
AFGTDRSDAITFFVFDLPYLDGYDLRDASLNDRRALLEPLLANSDPARVRFSPDLGEDVA
SLIASACDTGLEGLIGKRADSRYRAGRSPAWIKLKCRRRQEFVIGGFTEPSGSRHGFGAL
LLGVHEPAPAGKRRRGPGPLRYVGRVGTGFDARMLDRLAAILRKHERDTMPFDEPPRERT
RTRVHWVEPTLVAECEFAEWTGDGIVRQAAFIALREDKPAAQIVREMPKHTETEVTMDQR
PTPHDDTRKRASHAARESADRKQSARSRAAARAEDDASGPDTLGRVRITHPERVLDPQSG
TRKIDLARYWQWVAPWLLPDLEGRPVSLVRAPGDIAGELFFQKHAERREIPFVTQHEGLD
PGHGPLLSIDNVDALLGAAQMGTVELHTWNAHASNIERPDRIVFDLDPDPALPWRTMIDA
AQLVRGLLDELGLVSFCKTSGGKGLHVVVPLTRHAGWDDVKDFSRAVAQHVAGTLPDRFT
ATMGPRHRRGKIFVDYLRNGRGASTIAAYSVRARPGMGVSVPLDWDEVPDTTGGAQWTID
TLHERLDTLKRDPWEGYAKARQRITAAMRARLGADT
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggccggcaagctcgatccgtatcgccgcaagcgccatttcggcgcgacgcccgagccc
gaaggggcgcacggcaagcgtcgcgcgaagccggatacgcaagcggcctcgaagccgaag
gcgaagcagcccgccgcgcgcgcacgccatccgctgcgcttcgtgatccaggagcaccac
gcgcgccggctgcactacgatttccggctcgaactcgacggcacgctgaaatcgtgggcc
gtgccgaaggggccgagcttcgatcctcaggtgaagcggctcgcggtgcacgtcgaggac
catccgctcgaatacgcatcgttcgaaggcgagattccggccgggcattacggtgcgggc
tcggtcgtcgtgtgggacgaaggcacgtggacgcccgatggcggcgtcgcgcaggcgcgc
gaaggctaccgggccggcaaactgacgttccggctcgacggcgaaaagctgcacggcggc
tgggcgctcgtgcgcagcgggcggcaggaagggcgtcaggagcagtggctgctgatcaag
gagcgcgacgacgacgcgcgcagcgccgatgaattcgacgtcgtcggcgagcggccgggt
agcgtgcatgacggcgcggccaacggcgcggcacgcaagcgcgctgcgcggcgcggccga
tcgaccgacgcggacggcgatgtacatgacgcgcaacacgcaagccacgaaagccacgaa
agccacgaaagccacgcaagccatcgccccaccgacccgtcgcaggtcgaaggcgcggtg
cgcgcgccgctgcccgagcgcgtcgcgccccaactcgcgacgctggtcgatgcaccgccg
acgcagggcggctggtgctacgaactgaagttcgacggctaccgcatcctggcgcgcatc
gcaggcaagggcgcacgccggcgcgtcacgctgatgacgcgcgaaggccgggactggacc
gcgaaactgcgcgcgcagcgcgacgcgctcgcggcgctcgacgtcgacgacgcatggctc
gacggcgaggccgtcgtgctcggcgagaacggcctgcccgatttccaggcgctgcagaac
gcgttcggcacggaccgctcggatgcgatcaccttcttcgtgttcgacctgccttatctc
gacggctacgacctgcgcgacgcgtcgctcaacgatcgtcgcgcgctgctcgaaccgctg
ctcgcgaacagcgacccggcgcgcgtgcgcttttcgcccgatctcggcgaggacgtcgcg
tcgctgatcgcgagcgcgtgcgacaccggcctcgaaggactgatcggaaagcgcgcggac
tcgcgctatcgcgccggccggtcgcccgcgtggatcaagctcaaatgccggcgccggcag
gagttcgtgatcggcggctttaccgagccgtcgggcagccggcacggcttcggcgcgctg
ctgctcggcgtgcacgagccggcgccggccggcaagcggcggcgcgggcccgggccgctg
cgctacgtcggccgcgtcggcaccggcttcgatgcgcggatgctcgaccgtctcgccgcg
atcctgcgcaaacacgagcgcgacacgatgccgttcgatgaaccgccgcgcgaacgcaca
cgcacccgcgtgcactgggtcgagccgacgctcgtcgccgaatgcgaattcgcggaatgg
actggcgacgggatcgtgcggcaggccgcgttcatcgcgctgcgcgaggacaagccggcg
gcgcagatcgtccgcgagatgcccaaacacacggaaacggaggtgacgatggatcaacgc
ccgaccccgcacgacgacacacgcaagcgcgcatcgcatgccgctcgtgaaagcgccgat
cgcaagcaatccgcacggtctcgcgcagcggcccgcgccgaagacgacgcgtccggcccc
gacacgctcggccgcgtacgcatcacgcatcccgagcgcgtgctcgacccgcaaagcggc
acgcgcaagatcgacctcgcgcggtactggcaatgggtcgcgccgtggctgttgcccgac
ctcgagggccggccggtttcgctcgtgcgcgccccgggcgacatcgccggcgagctgttc
ttccagaagcacgcggagcgtcgcgagattccgttcgtcacgcagcacgaagggctcgac
ccgggccacggaccgctgctgtcgatcgacaacgtcgacgcgctgctcggcgccgcgcag
atgggcacggtcgaactgcacacgtggaacgcgcatgcgtcgaacatcgagcggcccgac
cgcatcgtgttcgacctcgatcccgatccggcgctgccgtggcgcacgatgatcgacgcc
gcgcagctcgtgcgcgggctgctcgacgagctcgggctcgtgtcgttctgcaagacgagc
ggcggcaaggggctgcacgtcgtcgtgccgctcacgcggcatgcgggctgggacgacgtg
aaggacttttcgcgcgcggtcgcgcagcacgtcgccggcacgctgcccgaccgcttcaca
gcgacgatggggccgcgccaccggcgcggcaagatcttcgtcgactacctgcgcaacggg
cgcggtgcgagcacgatcgccgcctattcggtgcgcgcgcggcccggcatgggcgtgtcg
gtgccgctcgactgggacgaggtgcctgacacgacgggcggcgcgcaatggacgatcgac
acgctgcacgaacggctggacacgctgaagcgcgacccgtgggaaggctacgcgaaggcg
cgccagcgcatcaccgcggcgatgcgggcgcggctcggcgccgacacgtga
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