Bifidobacterium choerinum: BcFMB_01220
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Entry
BcFMB_01220 CDS
T05748
Name
(GenBank) hypothetical protein
Organism
bcho
Bifidobacterium choerinum
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Big_2
SLH
Alpha-amylase
CBM_25
HL_N-beta
Bac_A_amyl_C
CBM26
aBig_2
Motif
Other DBs
NCBI-ProteinID:
ATU19782
UniProt:
A0A2D3D2U4
LinkDB
All DBs
Position
complement(320736..325577)
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AA seq
1613 aa
AA seq
DB search
MTPLSEKHGVGPVSDKRPSGRRFATKAIAGLAAAATLVGGMALGTSTAVAADHVGPTTSY
DRTLGNATFEAARKQYGLAQEMSYGAILHAWMWSFNTIKQKMPEIAAAGYTSIQTSPISE
IKGPVNGMQFDENWYYVYQPTGTKIGNKVVGTEDELKAMTAEAHKYGIRVIVDGVINHFS
SDWNAIDSDWRSEGNFHQAWGICDKQESTSHNGDRIDYSNRWKVTQCHLLGLWDLNTQSQ
SVADRMHDYLARAVDDGVDGFRYDAAKHIELPDEFDTHSPYFDTILSNGAQYQYGEVLQG
DSGLNAAAYPALFDKYSSNGGGNTGSKYGGAVRAAINSGSMNAQSLRNLQGDGVRDNQLV
TWVESHDNYANKEVDTEIGKVGVSTRISADKIRKGWAIIASRAGGAPLFFNRPVGSGGTN
NNQFSERTTLGMAGDDEWKHPEVTWVNKFRNAMEGSPENMQNCQGDNSCLMIERGIDDGS
PDNNGVVVVNSGGDKDLSGISTTLDDGQYKDQVNGGQITVSGGKITSGRAPGGKVAVFWN
NKGGTTIDAETISAAPINTTFTGSGIEVTVRAQNATNLKWSTSDGKSGTFVSGDKITVGA
NAEVGDVITLTLTGKGTGATGKDLKVEYTYEKVERSQQQLAKYYSTNTAGQKKKKTISVD
GSASDWDSSMLIAQGTANDDPRVYRPNSMYEMPIDLYALYGTYDDDNLYLMWEMTNVQDV
VDPGDNFPLNRPVHTEKGPAAWIALDTGRSDNRVGKNANLQTGGTIWDSRISWEQNVNNV
IGLALKKGENGPWMYGGDETGLNANAIYGPGAAPAVGTQKTKMQYAAGTGLLSNEVWGLD
NAWGASNGRVPGDVKNDNGNWVNFKSKGHNPGAQDSICELAIPLEELGITAADVEKTGVG
VQIVATYGLSGMDSLPYDLAANDNADLPDTQSQENNSYEKSDDDSYSAPLARIGAAGGVI
ETIPVESVTINEGSSMSIDLGTSRTAKLSATVAPSNASSKKVTWSSSNEQIATVDSKGNV
KANKAGTVTITAKAGDKTDTITITVTGELIIPTTTTVYYPTSAYGADSTYLHYRVNKGGA
AGTWTTAPGVKMDAACDGYVKYTIDNPDQDEVEFVFNNGSGQWDNNGEANYKGTGESLLV
KSGQLTVDNPPCTVTVPVTSVSISGGDFELTTGATRKLTASVAPANATDRAVSWKSSNTS
VATVDASGTVKAVSTGTATITATAGGKSASIKVTVASDYIAVNSVAISGTGVSSGKATIN
VGAGLNLNATVLPNNATDRTVTWSTSNAEVATVSNGTVRGIKAGNAVITATAGNKSASII
VTVQNNGAVLQSISISGSGVSGGKLTLAQNKSVQLSVKANPSNATVGAAYWSSSDTSVAT
VDGNGKVTAKKEGVTAITVTASGKSAAIVLTVSKNGGSSDRFSDVPAGVAFHDEIEWLAA
QGITNGYSDGRFGYGDHLSRQDMAIFLYRLAKVHGVAGAASFTPSDADYARFSDVNRGSY
GAKEILWLAKNGISQGSNGRFKGNDKLTRQDMAVFLYRYAKLAGVQGAASFAPSAADYRR
FSDVKQGTFGAKEILWCAKVGITLGNANGTFGYGDKLTRSAMAAFLYRLNKLI
NT seq
4842 nt
NT seq
+upstream
nt +downstream
nt
atgacacctctgtctgaaaagcacggagtcggccccgtctcggacaagcgtccttcgggt
cgcaggttcgcgacgaaggcaatcgccggcctcgcggccgcggccacgcttgtcggcggc
atggcgttgggaacctccacggccgtggcggccgatcatgtgggcccgacgacgagctac
gaccgcacgcttggcaacgcgaccttcgaggccgcgcgcaagcagtacggcctcgcccag
gagatgagctacggcgcaatcctgcatgcatggatgtggtcgttcaacacgatcaagcag
aagatgccggagatcgccgccgcgggttacacgtccatccagacctcgccgatcagtgag
atcaaggggccggtcaacggcatgcagttcgatgagaactggtattacgtctaccagccg
accggcacgaagatcggcaacaaggtcgtcggcactgaggacgagctcaaggcgatgacc
gccgaagcgcacaaatacggcatccgagtaatcgtcgacggcgtcatcaaccatttcagc
tccgattggaacgccattgattccgattggcgttcggagggcaacttccaccaagcatgg
ggcatctgcgacaagcaggaaagcaccagccacaacggcgaccgcatcgattacagcaac
cgttggaaggtcacccagtgccatctgctcggcttgtgggatctgaacacccagagccaa
agcgttgcggaccgaatgcatgattatctcgcccgcgccgtcgatgatggtgtggacggc
ttccgctacgatgccgcgaagcacatcgagctcccggatgagttcgatacgcattcgccg
tatttcgacacgatcctgtcgaacggcgcgcagtaccagtacggtgaggtgctgcagggc
gattccggcctgaacgccgcggcgtatccggccctcttcgacaagtattcgagcaatggc
ggcggcaacaccggttcgaagtacggtggcgccgtacgtgccgcgatcaactcgggaagc
atgaacgcccagtcgctgcgcaatctgcagggtgacggcgtgcgtgacaaccagctcgtc
acctgggtcgaatcgcatgacaactatgcgaacaaggaagtcgatacggaaatcggcaaa
gtgggcgtctcgacgcgcatttcggccgacaagatccgcaagggatgggcgatcatcgcg
tcccgcgccggcggcgcgccgctgttcttcaaccgtccggtcggttccggcggcacgaac
aataaccagttctccgagcgtacgacgcttggcatggctggcgatgacgagtggaagcat
cccgaggtcacctgggtcaacaagttccgcaatgcgatggagggctcgcccgaaaacatg
cagaactgccagggcgacaactcctgcctgatgatcgagcgcggcatcgatgacggttcg
ccggacaacaacggtgtcgtcgtggtcaactccggtggagacaaggacctcagcggcatc
tcgacgacgctcgatgacggccagtacaaggatcaggtcaacggcggccagatcaccgtc
tccggcggcaagatcacgtccggccgcgctccgggtggcaaggtcgcggtgttctggaac
aacaagggcggcacgacgatcgatgccgagacgatcagcgccgcgccgatcaacacgacc
ttcaccggttctggcatcgaagtcaccgtgcgcgcgcagaacgcgacgaacctcaagtgg
tcgacctccgacggcaagtccggcaccttcgtctccggcgacaagattaccgtcggcgcc
aatgccgaagtcggcgatgtcatcacgctgacgctcaccggcaagggcaccggtgcgacc
ggcaaggacctcaaagtcgaatacacctatgagaaggtcgaacgcagccagcagcagctc
gccaagtactattcgacgaatacggccggccagaagaaaaagaagacgatttcggtcgat
ggctccgccagcgattgggacagctccatgctcatcgcgcagggtaccgcgaatgatgat
ccccgcgtctaccgtccgaattcgatgtatgagatgcccatcgatctgtatgccctctat
ggcacctatgacgatgacaatctctatctgatgtgggagatgaccaacgtccaggatgtc
gttgatcccggtgacaacttcccgctcaatcgtccggtccataccgaaaagggacctgcc
gcgtggattgcgcttgacaccggacgctccgataaccgcgtcggcaagaacgccaatctg
cagaccggcggcacgatctgggattcgcgcatctcatgggagcagaatgtcaacaatgtc
atcgggcttgccttgaagaagggcgagaatggtccctggatgtacggcggcgatgagacc
ggtctgaacgcgaacgcgatctatggtccgggcgcggctccggctgtcggtacgcagaag
accaagatgcagtatgcggctggaaccggtctgctcagcaatgaggtctggggtcttgac
aatgcttggggcgccagcaatgggcgtgtgccgggcgatgtgaagaacgacaacggcaac
tgggtcaacttcaagtccaagggacacaacccgggcgcccaggattcgatctgcgagctg
gccattccgctcgaagagcttggcatcacggcggccgacgtcgagaagaccggcgtcggt
gtgcagattgtcgccacctatggcctgtcgggcatggactcgctgccgtacgacctcgcc
gcgaacgacaacgccgatctcccggatacgcagtcgcaggagaacaactcctacgagaag
tccgatgacgactcgtactccgctccgctcgctcgcatcggcgccgccggtggtgtcatc
gaaacgattcctgtcgaatcggtgacgatcaacgaaggctcctcgatgtcgatcgacctc
ggcacctcgcgcacggcgaagctgagcgcgaccgtcgccccgtcgaatgcctcgagcaag
aaggtcacgtggagctcgtccaacgagcagatcgcgaccgtcgactcgaagggcaacgtc
aaggcgaacaaggccggcactgtgacgatcacggccaaagccggagacaagaccgacacg
atcacgatcaccgtgaccggtgagctcatcattccgacgacgacaaccgtctactatccg
acgagcgcctacggcgcggactccacctacctgcactaccgtgtgaacaagggtggtgcg
gccggcacgtggacgaccgcgcccggcgtgaagatggacgctgcctgcgatggctacgtc
aagtacacgatcgacaaccccgatcaggacgaagtcgagttcgtgttcaacaacggctcc
ggtcagtgggacaacaatggcgaagccaactacaagggcaccggcgagtcgctgctcgtc
aagagcggccagctcaccgttgacaatcctccgtgcacggtgaccgttccggtgacttcg
gtgtcgatttcgggtggcgatttcgagctgacaaccggcgcgacgcggaagctcacggcg
agcgtggctcctgcgaacgcgacggatcgcgcggtgtcgtggaagtcgtcgaacacttcg
gtggcgacggtggacgcgtcgggcacggtgaaagctgtctcgacgggcaccgcgacgatc
acggcgacggccggtggcaagtcggcctcgattaaggtgacggttgcttccgattacatt
gcggtcaattcggtcgcaatctcgggtactggcgtctcgagcggcaaggcgacgatcaac
gttggcgctggcctcaacctcaacgcgaccgtgctgccgaacaacgcgacggaccgcacc
gtcacgtggagcacgtcgaacgcggaggtggccaccgtcagcaacggcacggtgcgcggc
atcaaggctggcaacgcggtcatcaccgctaccgccggcaacaagtccgcatcgattatc
gtgacggtccagaacaacggagcggttctgcagtcgatctcaatctcgggcagcggcgtc
tcgggcggcaagctcacgcttgcgcagaacaagagcgtccagctttccgtgaaggcgaac
ccgtcgaacgcgacggtcggtgcggcctactggtcgtcctctgacacgtcggtcgcgacg
gtcgacggcaacggcaaggtcacggcgaagaaggaaggcgttacggcaatcaccgtgacg
gcctccggcaagtccgccgcgattgtgctgacggtgtcgaagaatggtggttcgtctgat
cggttctctgatgtgccggctggtgtggcgttccatgatgagattgagtggctggcggcg
cagggtatcacgaatgggtattcggatggtcgtttcggttatggtgatcatctgagccgt
caggatatggcgatcttcctgtatcgtctggcgaaggtgcatggtgtggcgggtgccgcg
tcgttcacgccgtcggatgcggattatgcgcggttctctgatgtgaatcgtggttcgtat
ggcgccaaggagatcctgtggctggcgaagaacggcatttcgcagggttcgaatggccgg
ttcaagggtaatgacaagttgacgcgtcaggatatggcggtgttcctgtatcggtatgcg
aagcttgccggtgtgcagggtgcggcgtcgtttgcgccgtcggctgcggattaccgtcgg
ttctctgatgtgaagcagggtacgtttggtgccaaggagatcctgtggtgcgcgaaggtg
ggtattacgcttggcaatgcgaatggcacgttcggttatggtgacaagctgacgcgttcg
gcgatggccgcgttcctgtaccgcctcaacaaactcatctga
DBGET
integrated database retrieval system
