Heyndrickxia coagulans DSM 1 = ATCC 7050: BF29_289
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Entry
BF29_289 CDS
T03712
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bcoa
Heyndrickxia coagulans DSM 1 = ATCC 7050
Pathway
bcoa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bcoa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BF29_289 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcoa03400
]
BF29_289 (ligD)
Enzymes [BR:
bcoa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BF29_289 (ligD)
DNA repair and recombination proteins [BR:
bcoa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BF29_289 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AJH79164
LinkDB
All DBs
Position
complement(290339..292180)
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AA seq
613 aa
AA seq
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MKPMLPVLKWSLPDTGKWAYEIKYDGYRAILDWTKGGMRLWSRNGKDLLPQFPEIRTFLQ
TLEGRVKGQLPLRLDGELVLLENPYKAGFRELQRRGRMKAKAAAEKAKVRPAHYLVFDLL
MLGGEDMAGKPYLQRKKVLEKFCETLALPLSPAPGETARVQQIPFTRDAPALKETVKNFN
SEGIVAKQTDSKWEAGKRVETWIKVKNWKTAACFITAYDAKNGYFDAAVFKDGGIFPIGQ
FLFSMNPGEKQILAEAVRKNAANDENGVYTIDPSICVELFYLEWDGANLREPHFHRFRFD
LSPDACTFEDFRLRNAAIPEEVEVTHPDKPLWKKRHVAKLDFLAYMRKISPFILPFLSDR
LLTVIRYPNGVFGEAFYQKNCPDYAPVFVDTAMHEDIRYIVCNHLKTLMWLSNQLAVEYH
IPFQTVNSRFVSEIVFDFDPPSRNEFQLAVEAALLLKQVTDALHLESFVKISGNKGLQVY
IPLPDGQFSWEDTRLFTEFMAAYFVSKSPEHFTIERMKKKRGGKLYVDFVQHAEGKTIIA
PYSMRGHEDALVAAPLFWKEVNASLSPDHFTIETVLSRVDRYGCPFARFFACKNGQPFAP
VLAFLKQNKGRPI
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgatgctgccggttttaaaatggtctctgcctgatacaggaaagtgggcatac
gaaatcaaatatgacggttatcgcgcgatcctcgactggacaaaaggcggcatgcggtta
tggagccgcaacggaaaagatttgctgccccagtttccggaaatccgcacctttttgcaa
acacttgaaggccgcgtaaaagggcagcttccgttacggcttgacggcgaacttgtgctg
cttgaaaatccgtataaagctggctttagggagctgcagcgccgcgggcggatgaaagcg
aaggcagctgcagagaaggctaaagtgcgccccgcccattatctcgtatttgatttgctc
atgcttggcggggaggatatggccggaaaaccgtatttgcagcgaaaaaaagtattggaa
aagttttgtgaaacgcttgctctgccgctctcccccgccccgggcgaaacggcacgggtc
cagcagatcccgtttacccgtgacgcgcccgccttaaaggagacggtgaaaaattttaac
agtgaaggcattgtcgcaaaacaaacggacagcaagtgggaagcgggaaaacgggttgag
acatggataaaagtgaaaaattggaaaacagccgcctgctttattacagcttatgacgcg
aaaaacgggtatttcgacgcagcggtgtttaaagatggcggcatttttccaatcggccag
tttcttttcagcatgaatccgggcgaaaaacaaatcctcgcagaagcagtcaggaaaaat
gccgcaaacgatgaaaacggcgtctatacgatcgatccttcgatttgcgtcgagttattt
tatttggaatgggacggcgccaacctgcgggaaccgcatttccaccgcttccgctttgat
ctttccccggatgcctgtacatttgaagatttcaggctccgtaacgccgccattccagaa
gaagtggaagtgacacatccggataaaccactatggaaaaaacggcatgtggcaaaactc
gactttcttgcttatatgcggaaaatttccccttttatactgccgtttctttcagacaga
cttttgaccgtcatccgttacccgaacggcgttttcggcgaagcattttaccagaaaaac
tgccccgattatgcgcccgtttttgtggatacggcgatgcatgaagacatccggtatatt
gtctgcaaccatttgaaaacactgatgtggctttcaaaccagcttgcggtggaataccat
atcccgtttcagaccgtaaacagccgttttgtcagcgagattgtatttgattttgacccc
ccttcccggaatgaatttcaacttgcagtagaagcagctttgctattaaaacaggtgacg
gatgcccttcatttggagagctttgttaaaatttccggcaataaagggctgcaagtctat
attccattgccggacgggcagttttcatgggaagatacaaggctgttcacggaatttatg
gctgcttatttcgtttcgaaatcgcctgaacattttacaatcgaacggatgaagaaaaag
cggggcggaaaattgtatgttgatttcgtccagcatgcggaaggaaaaacgatcattgcg
ccttattcgatgcgggggcatgaggatgcgcttgtggcggcgccgcttttctggaaagaa
gtaaacgcgtcgctttccccggatcactttaccattgaaacggtcctttcgcgcgtggac
cggtacggctgcccgtttgcgcgattctttgcctgcaaaaacggccagccttttgccccg
gtacttgcatttttaaagcagaacaaagggcgacccatatag
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