Heyndrickxia coagulans DSM 1 = ATCC 7050: BF29_3328
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Entry
BF29_3328 CDS
T03712
Symbol
addB
Name
(GenBank) helicase-exonuclease AddAB, AddB subunit
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
bcoa
Heyndrickxia coagulans DSM 1 = ATCC 7050
Brite
KEGG Orthology (KO) [BR:
bcoa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcoa03400
]
BF29_3328 (addB)
Enzymes [BR:
bcoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BF29_3328 (addB)
DNA repair and recombination proteins [BR:
bcoa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
BF29_3328 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
FAM193_C
NTPase_1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AJH77380
LinkDB
All DBs
Position
3225226..3228729
Genome browser
AA seq
1167 aa
AA seq
DB search
MSLRFITGRPGTGKTTFIQREIRQKLLGDPGGAPLIYLVPEQMTFLSETRLAHEPELGGM
IRAQVYSFTRLAWKILQEVGGISRTHVSSIGLNMLIRKILEDQKEELSVFTRAADKTGFI
DNVERILTEFKRFCVSPAQLQEKRASIGEADGGRVLSDKLHDLERVYQAYEQKLEGKYID
SEDYLRLLASAVEKSRYLQDAEIYIDGFHTFNPQEYLVIGELLKKCRRVTVALTTDRAFR
GRQPDDLYLFRMPGEAYAHIYELARAFQIETEEDVALYEPARFRHESLRFLQSRFEELPF
PSFPGESSIEIWQANNRRAEIEGVARSIREAVMEGSCRYRDIAILVRNGEAYQDLIETVF
YDYDVPYFIDRKRPMLNHPLIELIRSTLEIIRGNWRYEPVFRAIKTELLFPPGDARTLRE
KMDRLENYCLAYGIQGERWTSRKRWEYRRIRGLELENLPQTDEERKIEQELNELRLLVTA
PILRLSRRLKRARTGKALCEALYLYLEELEIPEKLEALRLEKEEAGDLVAAREHDQAWDE
VMGVLDQYVEILGDGPADVGKFSAIMETGLESLKFSIVPPALDQVLVANLEQSRLSDVKL
AFIIGANDGVMPAKISEDGVLNDEEREYLRLEGLEIMPGSKRRLLDEEFIFYRALTTPSE
KLVLSFPLADEEGKALLPSPFINRIEDMFPARGGGLWVNDPAELEEKQQAAYISHPAAAI
AFVTSQLQLKKRGYPMAGFWWDTYNFYMENPEWKNRAAHAFSSLFYQNKARKLSEKTSRE
LYGDHILASVSRMEQFFTCPFSHFSTYGLRLRERDVFRLDAPNIGDLFHGALKWISDTLQ
REGIPWSEMTKQQSMELAKAAVDDLAPKLQHQILLSSKRYQYIKRKLEQVVGRASYILSV
HAKRSGFEPVAMELAFGPKKELPPLSFTLKNGAKMELQGRIDRVDKAESENGVYVRIIDY
KSSAHKLDLTNVYYGLDLQMLTYLDLIMTYSKQLTGEETIPAGVLYFHLHDPLISAEKML
TAEEIEEEILKDFRMRGLLLDSPEVITLMDQSLESGNSAIVSAGLKKDGQLTARSEVASK
EDFEAIRSYVRNIYTEAGNAILSGTTDIAPYKIKKQAACTFCPFRSVCQFDQSMEENNYR
LIHPEKPEEILAKMRKERRTDENSHSG
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
ttgtcccttcgatttattaccgggcgccccgggacaggaaagacaactttcatccaacgt
gaaatcaggcagaaactgcttggcgatccgggcggggcaccgctcatttaccttgttccg
gagcaaatgacttttttatcggaaacacggcttgcgcatgaacctgaactgggcgggatg
atccgtgcccaggtgtacagttttacgcgccttgcctggaaaatattgcaggaagtcggc
gggatcagccgtacccatgtatcgagcatcggattaaatatgctcattcggaaaattttg
gaagaccaaaaagaagaactgtcggttttcacgcgggcggcggataagacgggctttatt
gacaatgtcgaacgcattctgactgagttcaaacggttttgcgtctcgcctgcacagctt
caggaaaaacgcgcctcaatcggggaagcggacgggggaagagtgctttccgacaagctg
cacgatttggaacgcgtatatcaggcatatgagcaaaagctggaaggcaaatacattgat
tcagaagattacttgaggctacttgcttctgccgttgaaaaatcgcgctatctccaagat
gcggaaatttatatagacgggttccatacttttaacccgcaggaatacctggtgatcggg
gaactcttgaaaaaatgccgccgcgttacggttgcgctcacaacggaccgggctttccgc
gggaggcagccggatgatttatacttgttccggatgccgggagaagcctatgcacatatc
tatgaactggcgcgcgcctttcaaattgaaacggaagaagacgtggcgctgtatgaaccg
gcccgtttcaggcatgaaagtttgcgctttttgcagtcccggtttgaagaactgccgttt
ccttcttttccgggggaaagcagcatcgagatctggcaggcgaacaaccggcgggcggaa
atcgaaggcgttgcccgttctatccgtgaagccgtcatggaaggaagctgccgttaccgt
gatattgccatccttgtccgcaacggggaggcctatcaggatttaatcgaaacggttttt
tacgattatgatgtgccgtattttatcgacagaaaacggccgatgctgaaccatccgctc
attgaactgatccgttcgactttggaaatcatccgcggcaactggcgttatgaaccggtt
ttccgtgccatcaaaacagaattgctgtttccgcctggagatgcccgcacgttgcgtgaa
aaaatggaccggcttgaaaactattgcctggcttacggcatccagggagaacgctggacg
agcagaaaaagatgggaatataggcggatccgcggcctcgaactggaaaaccttccgcaa
acggatgaggaaagaaaaatcgaacaggaactgaatgaactcaggcttctggtcacagcg
ccgattttgcgcctgtcgcggcgtttgaagcgcgcccgcaccggaaaagcgctttgcgaa
gcattgtatctttatctcgaagaattggagattccggaaaaactggaagcgctccggctt
gaaaaggaagaagcgggggatcttgttgctgccagggaacatgaccaggcatgggatgaa
gtcatgggcgttttggaccagtatgttgaaatccttggcgatggacctgctgatgttggg
aaattctctgccattatggaaaccgggcttgagtcattaaaattttccattgttccaccg
gctttggaccaggtgctcgtggcgaatctggaacagtcccggctgtccgatgtcaaactg
gcatttattatcggggccaatgacggggtcatgccggcgaaaatttccgaagatggcgtt
ttaaatgatgaagagcgtgaatatttgcggctggaagggcttgaaatcatgcccggcagc
aaaaggcgcctgctggacgaagaatttattttttaccgggcattgacgacgccgtctgaa
aaactggttctctcttttccgcttgccgatgaggaagggaaagcattgctgccgtccccg
ttcatcaaccggatagaggacatgttcccggcccgcggcggcggattatgggtaaatgac
ccggcggaactggaagagaaacagcaagccgcatacatttcccatccggcggctgctatt
gcttttgtcacttcgcagctgcagctgaaaaaaagagggtatcccatggccggcttctgg
tgggatacgtataacttctatatggagaacccggaatggaaaaaccgggcggcccatgct
ttttccagtttgttttaccaaaacaaagcccggaagctctccgaaaaaacgagccgggaa
ctgtacggcgaccatatccttgccagcgtatcgagaatggagcagtttttcacctgcccg
ttttcccatttttcgacatacgggttgaggctgcgggaacgggatgtgttccgccttgat
gcgccgaatatcggggatcttttccacggcgcattgaaatggatttccgataccctgcag
cgcgaaggcattccgtggtcagagatgacaaagcagcaaagcatggagcttgcaaaagcg
gcagtggacgaccttgccccaaaattgcagcatcaaatcctgctcagttcgaaacgctac
caatatattaaaaggaaactggaacaggttgtcggaagggcttcttatattttaagcgtc
catgcgaaacgaagcggctttgaaccggtcgcgatggaactcgctttcgggccgaaaaaa
gagcttccgccgctttcatttacattgaaaaacggggcgaaaatggagctgcagggccgg
attgaccgtgtcgacaaggcagaaagcgaaaacggtgtgtacgtcaggatcatcgattac
aaatcaagcgcgcacaagcttgatttgacaaatgtgtattacggccttgacctgcaaatg
ctcacttatctggatctcattatgacgtattcgaaacagctgacaggtgaagaaacgatt
ccggcgggcgttttgtatttccatcttcatgatccgctgatttcggcggaaaaaatgctg
acggctgaagaaattgaagaagaaattttaaaagacttccggatgcgggggctgttgctg
gacagcccggaagtgatcacattgatggaccagtcgcttgaatccggcaacagtgcgatt
gtgtcggcaggtttgaaaaaggacggccaattaacggcccggtccgaagtggcaagcaaa
gaagactttgaagcgatccgcagctatgtgcgcaacatttacacagaggccggcaatgcg
atcctgtccggcacgacggatatcgcgccttataaaataaaaaaacaggcggcgtgcaca
ttctgcccgttccgttcagtctgccagtttgaccagtcgatggaagagaacaattaccgc
ctcattcacccggaaaaaccggaagaaatcctcgccaaaatgagaaaggagcgcagaaca
gatgaaaacagccattccggataa
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