Sutcliffiella cohnii: BC6307_00200
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Entry
BC6307_00200 CDS
T06787
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bcoh
Sutcliffiella cohnii
Pathway
bcoh03030
DNA replication
bcoh03410
Base excision repair
bcoh03420
Nucleotide excision repair
bcoh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bcoh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BC6307_00200 (ligA)
03410 Base excision repair
BC6307_00200 (ligA)
03420 Nucleotide excision repair
BC6307_00200 (ligA)
03430 Mismatch repair
BC6307_00200 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bcoh03032
]
BC6307_00200 (ligA)
03400 DNA repair and recombination proteins [BR:
bcoh03400
]
BC6307_00200 (ligA)
Enzymes [BR:
bcoh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BC6307_00200 (ligA)
DNA replication proteins [BR:
bcoh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BC6307_00200 (ligA)
DNA repair and recombination proteins [BR:
bcoh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BC6307_00200 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BC6307_00200 (ligA)
MMR (mismatch excision repair)
DNA ligase
BC6307_00200 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BC6307_00200 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
RNA_pol_A_CTD
BRCT_2
HHH_3
HHH
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AST89802
UniProt:
A0A223KK22
LinkDB
All DBs
Position
44858..46861
Genome browser
AA seq
667 aa
AA seq
DB search
MNIQQAEARVKELHNILNQYNYEYHVIDKPSVSDAEYDSLITELKQLEQQYPELQSPDSP
TQRVGGAVLDMFSKVEHRVPMLSLGNAFNEDDLRSFDRRVKQAVGENVRYVVEMKIDGLA
VSLRYEDGVFVQGATRGDGTTGEDITANLKTIRSIPLRLKENVTLEVRGEAFMPKKSFVK
LNEDRLEREEEPFANPRNAAAGSLRQLDPKIAAQRNLDIFVYSLVNPEELGVTSHSEALQ
YLEKLGFKTNKERKVCNTIEEVVEFVLGWHTKRPELSYDIDGIVIKVDSLDQQEELGFTA
KSPRWAIAYKFPAEEVSTKLIDIELSVGRTGVITPTAILEPVKVAGTTVQRASLHNEDLI
REKDIKLGDYVVVKKAGDIIPEVVNVLTDRRTGEEVDFQMPTHCPECNSELVRIEGEVAL
RCINPKCPAQIREGLIHFVSRNAMNIDGLGEKVIAQLFSEKLIEDVADLYKLTKEQLIAL
ERMGEKSADNLIKAIEASKNNSLERLVFGLGIRLVGAKAAKTIAQHFPHIDSMMKASKEE
LVAIYEIGDKMADSVVTYFEQPEVLEVIQELKELGVNMEYKGAMPVNEEEVDSVFAGKTV
VLTGKLEALSRNDAKAAIERLGGKVTGSVSKKTDLVVAGEEAGSKLTKAQELGIEVWDEA
RLVQEIQ
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaacatacaacaagcagaagcgcgagtaaaagagcttcataatatattaaaccaatat
aattatgaatatcatgtaatagataagccgtctgtttcagatgctgaatacgattccctc
ataacggagttaaaacagttagaacaacaatatcctgaactccaaagccctgactctcct
acacagagagttgggggagcggtgttagacatgttctccaaagtggagcatcgcgttccg
atgttatcacttggaaatgcgtttaatgaagatgatttacgaagctttgatcgccgtgtg
aagcaagccgtaggggaaaacgtccgttatgtagtcgaaatgaaaattgacggattagcg
gtttcccttcgttatgaagatggggtgttcgtccaaggagcaacacgtggagatgggacg
acaggtgaagacattactgctaacttaaaaacgattcgctcgataccgttacgcttaaaa
gaaaacgtaacgttagaagtacgtggtgaagcgttcatgccgaaaaaatcatttgtaaaa
ctaaatgaagacaggctggaaagagaagaagaaccgtttgcaaacccaagaaatgcagca
gcagggtcccttcgccagttagatccaaaaattgctgcccaacgtaatttagacattttt
gtttacagtctagtaaatccagaagaactcggtgttacgtctcatagtgaggcccttcaa
tatttagaaaagctaggatttaaaacaaataaagaacgtaaagtgtgcaatacgatagaa
gaagtagttgaatttgttctaggatggcatacaaaacgaccagagctttcgtatgatata
gatggcatcgtcattaaggtagatagtttggaccagcaggaggaattaggatttacagcg
aaaagtccacgttgggctatcgcgtataagtttcctgcagaagaagtctcgacgaaatta
atcgacattgagcttagcgtaggaagaacgggtgttataacccctaccgctattttagag
cccgttaaagttgcgggaacaacggtacaacgtgcatcattacataatgaagacttaatt
agagagaaagatattaagctcggtgattatgtggtcgtaaaaaaagcgggagatattatc
cccgaagttgtgaatgtattgacagaccggcggacaggggaggaagtggatttccaaatg
ccaactcattgtccagagtgtaacagtgagttagtgcgaatagaaggagaagtcgcacta
cgatgtattaatccgaaatgtcctgcccaaattagagaaggcttaatacactttgtttca
agaaatgcgatgaatattgatggactcggtgaaaaagtaattgcccagcttttttctgaa
aaattaattgaagatgtggccgatctttacaagttaacgaaagaacaacttatagcatta
gaacgaatgggcgagaagtcagcggataatttaataaaagcgattgaagcgtccaaaaat
aattcgttagaacgactagtgtttggcttaggcatccgtcttgttggtgcaaaggcagcg
aagacgatagctcaacattttcctcatatagattcaatgatgaaagcatcgaaagaagag
ttagtggcgatttatgaaataggcgataaaatggctgattccgttgttacttattttgag
cagccagaagtactagaagtaattcaagaattaaaagaacttggcgtaaatatggaatat
aaaggtgcaatgccagtaaatgaagaagaagtagattcggtttttgctggtaaaacagtc
gttttaactggtaaactagaagcattatcaagaaatgatgcaaaagcagcaattgagcga
ttaggtggaaaagtgacaggaagtgtaagtaaaaagacagatctagtcgtagctggagag
gaagcaggctccaaactaacgaaagctcaagagctcggtattgaagtatgggatgaggca
agattggttcaagaaatacaataa
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