Burkholderia contaminans: NL30_32850
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Entry
NL30_32850 CDS
T03969
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bcon
Burkholderia contaminans
Pathway
bcon03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bcon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NL30_32850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcon03400
]
NL30_32850
Enzymes [BR:
bcon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NL30_32850
DNA repair and recombination proteins [BR:
bcon03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NL30_32850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AKM44709
LinkDB
All DBs
Position
3:complement(459080..461836)
Genome browser
AA seq
918 aa
AA seq
DB search
MAGKLEPYRRKRRFDATPEPAGAPGRRRAHADADASEHDAHKARPSTRTARPLRFVIQEH
HARRLHYDFRLELDGTLKSWAVPKGPSVDPSVKRLAVHVEDHPIEYASFEGEIPAGHYGA
GSVTVWDEGTWTPDGGIGRARDGYRAGKLTFRLDGTKLHGGWALVRSGRQQGRQEQWLLI
KERDDDARDAASFDVVAQQPGSVHDGRAQASRSAPAHPPHDGGARTTAIDPSQVEGAVRA
ALPDRVAPQLATLVDAPPAHDDWRYEVKFDGYRILARIAGRGARRHVTLMTREGRDWTPK
LRVQRDALAALDVDNAWLDGEAVVLGEHGLPDFQALQNALGAGRSDAVTLFVFDLPFLDG
HDLRDAPLTARRALLEPLLAGSDPARLRYSPDLGDDVASLIASACDTGLEGLIGKRADSR
YRGGRSSAWIKLKCRRRQEFVIGGYTEPSGSRHGFGALLLGVYEPAADGKRPRRPKRPHV
APPLRYVGRVGTGFDTRLLDRLAAMLRQHERGTTPFDPPPRERSRTRVHWVEPTLVAECE
FAEWTSDGIVRQAAFIALREDKPARQIVREVPRPTETEATMNESRAAHDASPQAPHTDTA
HGPTRGARSSASSGDTQGAAAADRVGRVRITHPDRVLDPQSGTRKIDLAHYWQWVAPWLL
PDLKGRPVSLVRAPGDIAGELFFQKHAERREIPFVTQHEGLDPGHGPLLSIDSVDALLGA
AQMGTIELHTWNAHASNIERPDRIVFDLDPDPALPWRAMIDAAQLVRGLLDELGLVSFCK
TSGGKGLHVVVPLTRHAGWDDVKNFSRAVAQHVAGALPDRFTATMGPRHRRGKIFVDYLR
NGRGASTIAAYSVRARPGMGVSVPLDWDEVPDTTGGAQWTIDTLRERLDALKRDPWAGYA
HARQRITASMRARLGAET
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atggccggcaagctcgaaccctatcgccgcaagcgccgcttcgatgcgacgccggaaccc
gcgggggcgcccgggcggcggcgcgcgcatgcggatgccgatgcgagcgagcacgacgcg
cacaaggcccgaccctccacgcgcacggcccggccgctgcgcttcgtgatccaggagcat
cacgcgcggcggctgcactacgacttccgtcttgaactcgacggcacgctgaagtcatgg
gcggtgccgaaagggccgagcgtcgatccgtcggtgaaacggctggccgtgcacgtcgag
gatcatccgatcgaatatgcgtcgttcgaaggcgagatcccggccggccattacggcgcg
ggctccgtcaccgtgtgggacgagggcacgtggacgcccgacggcggcattggccgggcg
cgcgacggctaccgcgcgggcaagctgacgttccggctcgacggcacgaagctgcacggc
ggctgggcgctggtgcgcagcgggcggcagcaggggcgccaggagcaatggctgctgatc
aaggaacgcgacgacgacgcgcgcgatgcggccagcttcgatgtcgtcgcgcagcagccg
ggcagcgtgcacgacggccgggcacaggcgtcgcgctcggcgcctgcccaccctccgcat
gacggcggggcgcgcacgacggcgatcgatccgtcacaggtcgaaggcgcggtacgcgct
gcattgcccgatcgcgtggcgccgcaactcgcaacgctcgtcgatgcaccgcccgctcac
gacgattggcgctacgaagtgaaattcgacggttacaggatccttgcgcggattgcaggt
cgcggtgcgcggcggcatgtcacgctgatgacgcgcgaaggtcgcgactggacgccaaaa
ctgcgtgtgcagcgcgacgcgctcgcggcgctcgacgtcgacaacgcgtggctcgacggc
gaggccgtcgtcctgggcgagcatgggctgcccgatttccaggcgctgcagaacgcgctc
ggcgcgggccgttcggacgcggtgacgctgttcgtgttcgacctgccgtttctcgacgga
cacgacctgcgcgatgcgccgctcaccgcgcggcgcgcgctgctcgaaccgctgctcgcc
ggcagcgatcccgcacggctgcgctactcgcccgatctcggcgacgacgtcgcgtcgctg
atcgcgagcgcgtgcgacaccgggctcgaagggttgatcggcaagcgcgcggattcacgc
taccgcggcggccgctcgtccgcgtggatcaagctgaaatgccggcggcgccaggagttc
gtgatcggcggctataccgagccgtcgggcagccggcacggcttcggcgcgctgctgctc
ggcgtgtacgaaccggccgcggacggcaagcggccgaggcgccccaagcggccgcatgtc
gccccgccgttgcgctatgtcggccgggtcggcaccgggttcgatacgcgtctgctcgac
cggctcgcggcgatgctgcgccagcacgaacgcggcacgacgccgttcgatccgccgccg
cgcgaacggtcccgcacgcgtgtccactgggtcgagccgacgctcgtcgccgaatgcgaa
ttcgcggaatggacgagcgacggcatcgtgcggcaggcggcgttcatcgcgctgcgcgaa
gacaagccggcgcggcagatcgtccgcgaagtgccacggccaaccgaaacggaggcaacg
atgaacgaatcccgcgcggcgcacgacgcttccccgcaagccccgcataccgataccgcg
cacggtcccacgcgcggcgcgcgatcgtccgcgtcttccggcgacacgcagggtgcggcc
gccgccgatcgtgtcggccgcgtgcgcatcacgcatcccgatcgggtgctcgatccgcaa
agcggcacgcgcaagatcgacctcgcgcactactggcaatgggtcgcgccgtggctgctg
ccggacctgaagggccggcccgtgtcgctcgtgcgcgcaccgggcgacatcgccggcgaa
ctgttcttccagaagcatgccgagcgccgcgagatcccattcgtcacgcagcacgaaggg
ctcgatcccggccacgggccgctgctgtcgatcgacagcgtcgatgcgctgctcggcgcc
gcgcagatgggcacgatcgagctgcacacgtggaacgcgcacgcgtcgaacatcgagcgg
ccggaccgcatcgtgttcgacctcgatcccgatccggcgctgccgtggcgcgcgatgatc
gacgccgcgcagctcgtgcgcgggctgctcgacgagctggggctcgtctcgttctgcaag
acgagcggcggcaaggggctgcacgtcgtcgtaccgctcacgcggcatgcgggctgggac
gatgtgaagaatttctcgcgtgcggtggcgcagcacgtcgcgggtgcgctgcccgaccgt
ttcacggcgacgatggggccgcgccatcggcgcggcaagatcttcgtcgactacctgcgc
aacggccgcggcgcgagcacgatcgccgcgtattcggtgcgcgcgcggcccggcatgggc
gtatcggtgccgctcgactgggacgaggtgcccgacacgacgggcggtgcgcaatggacg
atcgacacgctgcgcgaacgcctcgatgcgttgaagcgtgatccgtgggcaggctatgcg
cacgcgcggcagcgcatcaccgcgtcgatgcgcgcccggctgggtgctgaaacgtga
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