Burkholderia diffusa: WI26_27455
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Entry
WI26_27455 CDS
T04698
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bdf
Burkholderia diffusa
Pathway
bdf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bdf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
WI26_27455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bdf03400
]
WI26_27455
Enzymes [BR:
bdf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
WI26_27455
DNA repair and recombination proteins [BR:
bdf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
WI26_27455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AOI61447
UniProt:
A0A1B4C3F0
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All DBs
Position
3:152464..155229
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AA seq
921 aa
AA seq
DB search
MPGKLDPYRRKRHFGATPEPEGAHGRRRAKADAKPSARTRAGHPLRFVIQEHHARRLHYD
FRLELDGTLKSWAVPKGPSFDPSVKRLAVHVEDHPLEYASFEGEIPAGHYGAGSVVVWDE
GTWTPDGGLAQARDGYRAGKLTFRLDGEKLHGGWALVRSGRQQGRQEQWLLIKERDDDAR
AADEFDVVGERPGSVHDGAAPRGRGDKAKKRDARGARHDDGDRGRDRDDRDGPPADPSAI
EGAVRAPLPERVAPQLATLVDAPPAHGDWRYELKFDGYRILARISGKGTRRHVKLTTREG
RDWTAKLRAQRDALAALAVDGAWLDGEAVVLGANGLPDFQALQNALGAGRSDTVTLFVFD
LPYLDGHDLRDAPLTARRALLEPLLADSDPARLRFSPDLGDDVASLIASACDTGLEGLIG
KRADSRYRAGRSPAWIKLKCRRRQEFVIGGYTEPSGSRHGFGALLLGVHEPAAAGKRRRG
PTPLRYVGRVGTGFDTRMLDRLAPILRKHERDTTPFDPPPRERSRTRVHWIEPTLVAECE
FAEWTGDGIVRQAAFIALREDKPAEQIVREVPKHTETEVAMDRRQAAHDKPRAEHASHAA
HDANGREHHARSRVSTRTAGNDDTGPDRLGRVRITHPERVLDPGSGTRKIDLARYWQWVA
PWLLPDLKGRPVSLVRAPGDIAGELFFQKHAERREIPFVTQHAGLDPGHGPLLSLDSVDA
LLGAAQMGTIELHTWNAHASNIERPDRIVFDLDPDPALPWSAMIEAAQLVRGLLDELGLA
SFCKTSGGKGLHVVVPITRHLGWDDVKEFSRAVAQHVAAALPDRFTATMGPRHRRGKIFI
DYLRNGRGASTIAAYSARARPGMGVSVPLRWDEVSGTTGGAQWTIDTLHERLDRLERDPW
EGYDDTRQRITAQMRARLDAS
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgcccggcaagctcgatccatatcgccgcaaacgccacttcggcgcgacgccggaaccg
gaaggcgcgcacgggcgtcggcgggcgaaggcggatgcgaaaccgtccgcgcgcacgcgc
gccggccatccgctgcgcttcgtgatccaggagcatcacgcgcggcgattgcactacgac
ttcaggctcgaactcgacggcacgctgaagtcgtgggccgtgccgaaggggccgagcttc
gatccatcggtgaagcgtctggccgtgcacgtcgaggaccatccgctcgaatatgcatcg
ttcgaaggcgagattccggccgggcattacggcgcggggtcggtcgtcgtatgggacgaa
ggcacgtggacgcccgacggcggactcgcacaggcgcgcgacggctatcgcgcgggcaag
ctgacgttccggctcgacggcgagaagctgcacggcggttgggcgctcgtgcgcagcggt
cgccagcaggggcggcaggagcagtggctgctgatcaaggagcgcgacgacgacgcgcgc
gccgcggacgaattcgacgtcgtcggcgagcggccggggagtgtgcatgatggcgcggcg
ccgcgcggccgcggcgacaaggcaaaaaaacgcgatgcgcgtggcgcgcggcatgacgac
ggcgaccgcggccgcgaccgcgacgatcgtgacggcccgcctgcagatccgtccgcgatc
gaaggtgcggtgcgcgcgccgttgcccgagcgcgtcgcgccgcaactcgcgacgctggtc
gacgctccaccggctcacggcgactggcgctacgaactgaagttcgacggctaccggatc
ctcgcgcgcatttccggcaagggcacgcgccggcacgtgaagctgacgacgcgtgaaggt
cgcgactggacggcgaagctgcgcgcgcaacgcgatgcgctcgcggcgctcgccgtcgac
ggcgcatggctcgacggcgaggccgtcgtgctcggcgcgaacggtcttcccgatttccag
gcgctgcagaacgccctcggtgcgggacgctcggacacggtcacgctcttcgtattcgat
ctgccctatcttgacggccacgatttgcgtgacgcaccgctcaccgcacgccgcgcgctg
ctcgaaccgctgctggccgacagcgacccggcgcgactgcgcttctcgcccgatcttggc
gacgatgtcgcgtcgctgatcgcgagcgcatgcgacaccggcctggaagggctgatcggc
aagcgcgcggactcgcgctatcgggcgggacgatcgcccgcctggatcaagctcaaatgc
cggcgccggcaggagttcgtgatcggcggctacacggagccatcgggcagccgtcatggc
ttcggcgcgctgctgctgggcgtgcacgaaccggcggcggccggcaagcgaaggcgcggg
ccgacaccgctgcgctacgtcggcagggtcggcacgggcttcgacacacgcatgctcgac
cggcttgcgccgatcctgcgcaagcacgagcgcgacacgacgccgttcgatccgccgccg
cgcgaacgctcgcgcacgcgtgtgcactggatcgagccgacgctcgtcgccgaatgcgaa
ttcgcggagtggaccggcgacggcatcgtgcggcaggccgcgttcatcgcgttgcgcgaa
gacaagccggccgagcagatcgttcgcgaagtgccgaaacatacggaaacggaggtggcg
atggatcgacgtcaggccgcgcacgacaaacctcgcgccgagcacgcgtcgcacgccgct
cacgacgcgaatggtcgcgagcaccacgcgcgttcgcgggtatccacgcgcacggcgggc
aacgacgataccggcccggatcggctcggccgcgtgcgtatcactcatccggagcgcgtg
ctcgatccgggcagcggcacgcgcaagattgatctcgcgcgttactggcaatgggttgcg
ccgtggctgctgccggacctgaagggccggcccgtgtcgctcgtgcgcgcgcccggcgac
attgcgggcgagctgttcttccagaagcatgccgaacgccgcgagatcccgttcgtcacg
cagcacgccgggctcgatccggggcacggtccgctgctgtcgctcgacagtgtcgacgcg
ctgctcggcgccgcgcagatgggcacgatcgagctgcatacgtggaacgcgcatgcgtcg
aacatcgagcggccggaccggatcgtgttcgacctcgaccccgatccggcgctgccgtgg
agcgcgatgatcgaggccgcgcaactcgtgcgcgggctgctcgacgaactggggcttgca
tcgttctgcaagacgagcggcggcaaggggctgcatgtggtcgtgccgatcacgcggcac
ctcggatgggacgacgtgaaggagttctcccgcgccgtcgcgcagcacgtcgcggcagcg
ttgcccgatcgtttcaccgcgacgatggggccgcgtcatcgtcgcggcaagatcttcatc
gactatttgcgcaacggtcgcggcgcgagcacgatcgccgcgtattcggcgcgtgcgcgg
cccgggatgggcgtgtcggtgccgctgcgctgggacgaggtgagcggcacgacgggcggc
gcgcaatggacgatcgatacgctgcacgaacggctcgaccggctcgaacgcgatccgtgg
gaaggctacgacgacacgcggcagcgcatcaccgcgcagatgcgcgcgcgactcgacgcg
tcgtga
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