KEGG   Burkholderia diffusa: WI26_27455
Entry
WI26_27455        CDS       T04698                                 
Name
(GenBank) DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bdf  Burkholderia diffusa
Pathway
bdf03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bdf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    WI26_27455
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bdf03400]
    WI26_27455
Enzymes [BR:bdf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     WI26_27455
DNA repair and recombination proteins [BR:bdf03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     WI26_27455
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: AOI61447
UniProt: A0A1B4C3F0
LinkDB
Position
3:152464..155229
AA seq 921 aa
MPGKLDPYRRKRHFGATPEPEGAHGRRRAKADAKPSARTRAGHPLRFVIQEHHARRLHYD
FRLELDGTLKSWAVPKGPSFDPSVKRLAVHVEDHPLEYASFEGEIPAGHYGAGSVVVWDE
GTWTPDGGLAQARDGYRAGKLTFRLDGEKLHGGWALVRSGRQQGRQEQWLLIKERDDDAR
AADEFDVVGERPGSVHDGAAPRGRGDKAKKRDARGARHDDGDRGRDRDDRDGPPADPSAI
EGAVRAPLPERVAPQLATLVDAPPAHGDWRYELKFDGYRILARISGKGTRRHVKLTTREG
RDWTAKLRAQRDALAALAVDGAWLDGEAVVLGANGLPDFQALQNALGAGRSDTVTLFVFD
LPYLDGHDLRDAPLTARRALLEPLLADSDPARLRFSPDLGDDVASLIASACDTGLEGLIG
KRADSRYRAGRSPAWIKLKCRRRQEFVIGGYTEPSGSRHGFGALLLGVHEPAAAGKRRRG
PTPLRYVGRVGTGFDTRMLDRLAPILRKHERDTTPFDPPPRERSRTRVHWIEPTLVAECE
FAEWTGDGIVRQAAFIALREDKPAEQIVREVPKHTETEVAMDRRQAAHDKPRAEHASHAA
HDANGREHHARSRVSTRTAGNDDTGPDRLGRVRITHPERVLDPGSGTRKIDLARYWQWVA
PWLLPDLKGRPVSLVRAPGDIAGELFFQKHAERREIPFVTQHAGLDPGHGPLLSLDSVDA
LLGAAQMGTIELHTWNAHASNIERPDRIVFDLDPDPALPWSAMIEAAQLVRGLLDELGLA
SFCKTSGGKGLHVVVPITRHLGWDDVKEFSRAVAQHVAAALPDRFTATMGPRHRRGKIFI
DYLRNGRGASTIAAYSARARPGMGVSVPLRWDEVSGTTGGAQWTIDTLHERLDRLERDPW
EGYDDTRQRITAQMRARLDAS
NT seq 2766 nt   +upstreamnt  +downstreamnt
atgcccggcaagctcgatccatatcgccgcaaacgccacttcggcgcgacgccggaaccg
gaaggcgcgcacgggcgtcggcgggcgaaggcggatgcgaaaccgtccgcgcgcacgcgc
gccggccatccgctgcgcttcgtgatccaggagcatcacgcgcggcgattgcactacgac
ttcaggctcgaactcgacggcacgctgaagtcgtgggccgtgccgaaggggccgagcttc
gatccatcggtgaagcgtctggccgtgcacgtcgaggaccatccgctcgaatatgcatcg
ttcgaaggcgagattccggccgggcattacggcgcggggtcggtcgtcgtatgggacgaa
ggcacgtggacgcccgacggcggactcgcacaggcgcgcgacggctatcgcgcgggcaag
ctgacgttccggctcgacggcgagaagctgcacggcggttgggcgctcgtgcgcagcggt
cgccagcaggggcggcaggagcagtggctgctgatcaaggagcgcgacgacgacgcgcgc
gccgcggacgaattcgacgtcgtcggcgagcggccggggagtgtgcatgatggcgcggcg
ccgcgcggccgcggcgacaaggcaaaaaaacgcgatgcgcgtggcgcgcggcatgacgac
ggcgaccgcggccgcgaccgcgacgatcgtgacggcccgcctgcagatccgtccgcgatc
gaaggtgcggtgcgcgcgccgttgcccgagcgcgtcgcgccgcaactcgcgacgctggtc
gacgctccaccggctcacggcgactggcgctacgaactgaagttcgacggctaccggatc
ctcgcgcgcatttccggcaagggcacgcgccggcacgtgaagctgacgacgcgtgaaggt
cgcgactggacggcgaagctgcgcgcgcaacgcgatgcgctcgcggcgctcgccgtcgac
ggcgcatggctcgacggcgaggccgtcgtgctcggcgcgaacggtcttcccgatttccag
gcgctgcagaacgccctcggtgcgggacgctcggacacggtcacgctcttcgtattcgat
ctgccctatcttgacggccacgatttgcgtgacgcaccgctcaccgcacgccgcgcgctg
ctcgaaccgctgctggccgacagcgacccggcgcgactgcgcttctcgcccgatcttggc
gacgatgtcgcgtcgctgatcgcgagcgcatgcgacaccggcctggaagggctgatcggc
aagcgcgcggactcgcgctatcgggcgggacgatcgcccgcctggatcaagctcaaatgc
cggcgccggcaggagttcgtgatcggcggctacacggagccatcgggcagccgtcatggc
ttcggcgcgctgctgctgggcgtgcacgaaccggcggcggccggcaagcgaaggcgcggg
ccgacaccgctgcgctacgtcggcagggtcggcacgggcttcgacacacgcatgctcgac
cggcttgcgccgatcctgcgcaagcacgagcgcgacacgacgccgttcgatccgccgccg
cgcgaacgctcgcgcacgcgtgtgcactggatcgagccgacgctcgtcgccgaatgcgaa
ttcgcggagtggaccggcgacggcatcgtgcggcaggccgcgttcatcgcgttgcgcgaa
gacaagccggccgagcagatcgttcgcgaagtgccgaaacatacggaaacggaggtggcg
atggatcgacgtcaggccgcgcacgacaaacctcgcgccgagcacgcgtcgcacgccgct
cacgacgcgaatggtcgcgagcaccacgcgcgttcgcgggtatccacgcgcacggcgggc
aacgacgataccggcccggatcggctcggccgcgtgcgtatcactcatccggagcgcgtg
ctcgatccgggcagcggcacgcgcaagattgatctcgcgcgttactggcaatgggttgcg
ccgtggctgctgccggacctgaagggccggcccgtgtcgctcgtgcgcgcgcccggcgac
attgcgggcgagctgttcttccagaagcatgccgaacgccgcgagatcccgttcgtcacg
cagcacgccgggctcgatccggggcacggtccgctgctgtcgctcgacagtgtcgacgcg
ctgctcggcgccgcgcagatgggcacgatcgagctgcatacgtggaacgcgcatgcgtcg
aacatcgagcggccggaccggatcgtgttcgacctcgaccccgatccggcgctgccgtgg
agcgcgatgatcgaggccgcgcaactcgtgcgcgggctgctcgacgaactggggcttgca
tcgttctgcaagacgagcggcggcaaggggctgcatgtggtcgtgccgatcacgcggcac
ctcggatgggacgacgtgaaggagttctcccgcgccgtcgcgcagcacgtcgcggcagcg
ttgcccgatcgtttcaccgcgacgatggggccgcgtcatcgtcgcggcaagatcttcatc
gactatttgcgcaacggtcgcggcgcgagcacgatcgccgcgtattcggcgcgtgcgcgg
cccgggatgggcgtgtcggtgccgctgcgctgggacgaggtgagcggcacgacgggcggc
gcgcaatggacgatcgatacgctgcacgaacggctcgaccggctcgaacgcgatccgtgg
gaaggctacgacgacacgcggcagcgcatcaccgcgcagatgcgcgcgcgactcgacgcg
tcgtga

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