Brachypodium distachyon (stiff brome): 100824247
Help
Entry
100824247 CDS
T01717
Name
(RefSeq) DNA mismatch repair protein MSH3 isoform X2
KO
K08736
DNA mismatch repair protein MSH3
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
100824247
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bdi03400
]
100824247
DNA repair and recombination proteins [BR:
bdi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
100824247
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
100824247
NCBI-ProteinID:
XP_010240638
UniProt:
A0A2K2CJI7
LinkDB
All DBs
Position
5:27868739..27874721
Genome browser
AA seq
1076 aa
AA seq
DB search
MGKQPKQQVLSRFFAPSAAAKPPVAPPPPNPPASAFASFSPAKRARALSRSPKTPDAKKH
KPSSSSSAPARDAVRRRLLEPPLSALPAPTAVPRLPASNPSSSGSGSGKGYTPLEQQVVD
LKARHPDVLLMVEVGYRYRFFGEDAAAAASVLGIVAHPDRSFLTASVPTFRLGFHVRRLV
AAGHKVGVVRQTETAAIKAAHGGAAAGAPFARGLSAVYTRATIEASAGELEGGGAPEEGS
RYLVCVVDREAEAVGREGFEVKVGVVAVEVSTGEVVHGEFMDGASRSGLEAVLLGLAPVE
VILGTPLSFATEKLMRAYAGPASNVRVECTPRMCFGEAGALAELLSFFEKSEVNSPTIEN
NRQMIEISEADNSCHGIDNNRQGIDNDLHGIEGIMALPELVVQAMALIVRYLKGFGMERL
ICFGSSFRPFSANTEMSLSANALQQLEVLKNNSDGSVEGSLFQAMNNTCTAFGSRLFRHW
LTHPLCDRNLICARHDAVSEISESMGSRQHSDSMLHDGEDGGCTASVRSDLSTVLSSILT
MLGRSLDSQRGITRIFHCKATAKEFVGVIEAILTAGKQLQKLVLEDTDTVSSQHAADQGD
MLNIFIASVDQFPEVAEGHVTVEMAKRKLDLLIVEYRKQLGMRNLEYKTVAGTTYLIELP
VDRRVPSNWMKVNSTKKTIRYHTPEIVKNLDNLVLAKEELAVICRTTWHTFLMDFGKYYA
QFQATVESLAALDCLYSLATLAKQNNYVQPNFVPENEASQIHIKDGRHPVLESLLGDNFV
PNDTDLQADEEYCQIVTGPNMGGKSCYIRQVALITIMAQVGSFVPASSARLHVVDGIYTR
MGASDSIQQGTSTFYEELNEASNILHNCSSRSLVIIDELGRGTSTHDGVAIAYATLQYLL
KEKKCIVIFVTHYPKILDIQREFEGSVGAYHVSYLSTRKLLEITDEKMEIGTETEDLGEI
TFLYKLVAGASDRSFGLNVALLAQLPLSCIRRASVMAAKLQEELSEREENKVGRLMEKPA
GHSPKAVCAAQPYQGLMEACRRILGDMRCVESSNDLTDTLSHLRNAKEIAVKTTKG
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagcaaccgaagcagcaagtgctctcccgcttcttcgctccctccgccgccgcc
aaaccgcccgtggcaccgcctccgccgaacccacccgcctccgccttcgcttccttctct
cccgccaagcgcgcgcgcgccctctcccgctcccccaaaacccccgacgccaaaaaacac
aaaccctcctcatcctcctccgcccccgctcgcgatgccgtccgccgcaggctcctcgag
ccgcctctctccgcgctgccggcgccgacggcggttccacggcttcccgcatcaaaccct
agcagcagcggcagcggcagcggcaagggatacacgccgctggagcagcaggtggtggac
ctcaaggcgcggcacccggacgtgctcctcatggtcgaggtaggctaccgctaccgcttc
ttcggcgaggacgcggccgctgccgcctccgtgctcggcatcgtcgcgcacccggaccgc
agcttcctcaccgccagcgtccccactttccgcctcggcttccacgtccgccgcctcgtc
gccgcgggccacaaggtcggcgtcgtgcgccagaccgagaccgccgccatcaaggcggcc
cacggcggcgccgcggccggggcgccgttcgcgcgcgggctgtcggccgtgtacacgcgc
gccaccatcgaggcctccgccggggagttggagggcggcggcgcgcctgaggaggggagc
aggtacctcgtgtgcgtggtggacagggaggcggaggcggtggggagggaggggttcgag
gtgaaggtcggggtggtggccgtcgaggtgtccaccggcgaggtcgtgcatggggagttc
atggatggcgcctcccggagcggcctcgaggccgtgcttcttggcttggcgcccgtcgag
gtcattctcggcactccactctcgttcgctacggaaaagctgatgagggcatatgcggga
cctgcttctaatgtccgggttgagtgcaccccgcgcatgtgttttggtgaggccggcgct
ttagcagaattgctgtctttttttgagaagtcagaggtcaattcaccgaccattgaaaac
aataggcagatgatagaaataagtgaagcagacaacagttgtcacgggatagacaataat
cgtcaagggatcgacaatgatcttcatgggattgagggcatcatggctctgccagagcta
gtggtgcaagcaatggcattgattgttcgctatctcaagggtttcggtatggaaaggtta
atctgctttggttcttcattccgtccatttagtgctaatactgaaatgtccctatcagca
aacgctcttcaacaacttgaggtattgaagaacaactcagatggttcagtagaagggtct
ttattccaagctatgaacaacacatgtacagcttttggatctaggctgtttagacactgg
ttgacccaccccttatgtgatagaaatctaatatgtgctcgtcatgatgcggtctctgag
atctctgaatcgatggggtcacggcaacattcagatagcatgcttcatgatggagaggat
gggggctgcacagcttctgtgcgaagtgatctaagcaccgttctttcatctattctaaca
atgctgggaagatcacttgattctcaaagaggaataacacggatttttcactgcaaagcc
acagctaaagagtttgttggagtcatcgaggctatcctgacagctggaaagcagctgcag
aagcttgttctcgaggatactgacactgtgtcttctcagcatgctgctgatcaaggagac
atgctaaacatattcattgcgtctgttgatcaattccctgaggttgcagagggccatgtg
actgttgaaatggccaagcgaaaactggatttgttaattgttgagtatcggaagcagctt
ggtatgcgcaacttggagtacaaaactgtagctggaacaacttatttgattgaactacca
gtagatagaagggtgccttcaaattggatgaaagtaaatagcacaaaaaaaactatcaga
taccacactcctgaaatcgtgaaaaacttggacaatttagtgctggctaaggaagaacta
gcagttatctgcaggacaacatggcatacgttccttatggatttcggcaaatattatgcg
cagtttcaagcaactgttgagtctcttgcagctctagactgcttatactctcttgccaca
cttgcaaaacaaaataactatgtgcaacctaattttgttcctgagaatgaagcaagccag
attcacatcaaagacggccgccatccggttctggagtctctacttggagacaattttgtt
ccaaatgatacagaccttcaagcagatgaggagtactgccagattgttacaggaccaaac
atgggaggaaaaagttgctatattcgccaagttgcattaattaccattatggcccaggtt
ggttcctttgtaccagcttcatcagcaagattgcatgttgtcgatggaatctatactagg
atgggtgcatctgacagtattcagcaaggaacaagtaccttctatgaagagttgaatgaa
gcttccaacatattgcataactgctcatctcgatccttagttatcattgatgagcttggt
cgtggaacaagcacacacgatggtgttgctattgcttatgctacgttacagtatctcctc
aaagagaagaagtgtattgtcatttttgtcactcattatccaaaaattcttgatattcag
agagaatttgaaggttccgttggggcataccacgtttcatatctatcaacaaggaagctg
ttggaaatcactgatgaaaagatggaaattggcacagaaacagaggatcttggagaaatt
actttcttgtataaacttgttgctggagcttcagacagaagctttggtctcaatgttgct
ctgcttgcacagctcccattaagttgtattagacgtgcatcagtcatggcagccaaactg
caagaagagttgagtgagcgcgaggaaaataaggtagggaggctgatggagaaaccagcc
gggcactctccaaaagcggtctgtgccgcacagccttaccaagggttgatggaagcgtgt
cgcaggatacttggtgacatgagatgtgttgaaagcagtaatgacctgacggatacgctt
tctcatctgaggaacgccaaggagattgcagtgaagacaactaaaggctag
DBGET
integrated database retrieval system
