KEGG   Brachypodium distachyon (stiff brome): 100834631
Entry
100834631         CDS       T01717                                 
Name
(RefSeq) histone deacetylase 6 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
bdi  Brachypodium distachyon (stiff brome)
Pathway
bdi03082  ATP-dependent chromatin remodeling
bdi03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:bdi00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    100834631
   03083 Polycomb repressive complex
    100834631
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:bdi03036]
    100834631
Enzymes [BR:bdi01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     100834631
Chromosome and associated proteins [BR:bdi03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     100834631
   HDAC complexes
    Sin3A-HDAC complex
     100834631
    BRAF-HDAC complex
     100834631
    REST complex
     100834631
    SHIP complex
     100834631
    MiDAC complex
     100834631
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     100834631
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    100834631
  Chromatin remodeling factors
   NuRD complex
    100834631
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 100834631
NCBI-ProteinID: XP_003573796
UniProt: I1I3A6
LinkDB
Position
3:complement(21469862..21474659)
AA seq 457 aa
MAASGEGASLPSPAGGEDGRRRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHSLVVHYGL
HRLLELSRPFPASEADISRFHSEEYVSFLASATGNPNILDPRAVKRFNVGEDCPVFDGLF
PFCQASAGGSIGAAVKLNRGDADITVNWAGGLHHAKKGEASGFCYVNDIVLAILELLKFH
RRVLYVDIDVHHGDGVEEAFFTTNRVMTVSFHKYGDFFPGTGHITDVGAGEGKHYAVNVP
LSDGIDDSTFRDLFQCIMKRVMEVYQPEVVVLQCGADSLAGDRLGCFNLSVKGHADCLRY
LRSFNVPMMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNDYYEYFGPDYNLHIEP
RSVENLNTTKDLENIKNMILDHLSTLEHVPNTQFHDRPSDPEAPAEKEEDMDKRPSQRSR
LWSGGAYDSDTEDPDMKTEANDLIANSIVKDESNDDL
NT seq 1374 nt   +upstreamnt  +downstreamnt
atggcggcgtcaggcgaaggagcgtcgctgccgtctccggcgggtggcgaggacggccgc
cgccgtcgtgtcagctatttctacgagcccacgatcggcgattactactacgggcagggc
cacccgatgaagccgcaccgcatccgcatggcgcactcgctggtcgtccactatggtctc
caccgcctactcgagctctcccgccccttccctgcctccgaagccgacatcagccgcttc
cactccgaggaatacgtctccttccttgcctccgccactgggaacccgaacatcctcgac
ccccgcgccgtcaagcgcttcaacgtcggtgaggattgccccgtctttgacggtctcttc
cccttctgccaggcgtccgctggcggcagcatcggcgccgccgtcaagctcaaccgtggg
gacgccgacatcaccgtgaactgggctggcgggctccaccacgccaagaagggcgaggcc
tccggattctgctacgtcaacgacatcgtcctcgccatcctcgagcttctgaagttccac
aggcgtgtgctatatgtagacattgatgtccaccatggagatggtgtggaggaggccttc
ttcactacaaaccgagtcatgacggtttctttccacaagtatggggacttcttccctggt
actggacacattactgatgttggagctggtgaaggaaaacattatgctgtaaatgtcccc
cttagtgatggcattgatgactctacctttcgtgatctgttccaatgcatcatgaagaga
gtaatggaggtttatcagccagaggttgttgttctccaatgtggggctgactctttggcc
ggagataggttaggctgctttaatctgtctgtgaaaggccacgcagactgcctccgttac
cttaggtcattcaatgttcctatgatggttttagggggtggaggttacaccatcagaaat
gttgctcgctgctggtgctatgagactgcagttgccgttggggttgaacctgataacaag
ttgccttataatgattactatgagtactttggccctgactataatcttcatattgaacca
agaagcgtagagaatttaaatactacaaaagacctggagaatataaagaacatgatactg
gatcatctttcaacattagaacatgtcccaaacactcaatttcatgatagaccatctgat
cctgaagctccagcagagaaggaggaggatatggacaagagaccaagtcagcgcagcaga
ttatggagcgggggagcttatgattctgacacagaagatcctgacatgaaaactgaggct
aacgacttaattgccaattctatcgtgaaggatgaatcaaatgatgatttgtag

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