Brachypodium distachyon (stiff brome): 100834631
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Entry
100834631 CDS
T01717
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03082
ATP-dependent chromatin remodeling
bdi03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100834631
03083 Polycomb repressive complex
100834631
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bdi03036
]
100834631
Enzymes [BR:
bdi01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
100834631
Chromosome and associated proteins [BR:
bdi03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
100834631
HDAC complexes
Sin3A-HDAC complex
100834631
BRAF-HDAC complex
100834631
REST complex
100834631
SHIP complex
100834631
MiDAC complex
100834631
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
100834631
Heterochromatin formation proteins
Other heterochromatin formation proteins
100834631
Chromatin remodeling factors
NuRD complex
100834631
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
100834631
NCBI-ProteinID:
XP_003573796
UniProt:
I1I3A6
LinkDB
All DBs
Position
3:complement(21469862..21474659)
Genome browser
AA seq
457 aa
AA seq
DB search
MAASGEGASLPSPAGGEDGRRRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHSLVVHYGL
HRLLELSRPFPASEADISRFHSEEYVSFLASATGNPNILDPRAVKRFNVGEDCPVFDGLF
PFCQASAGGSIGAAVKLNRGDADITVNWAGGLHHAKKGEASGFCYVNDIVLAILELLKFH
RRVLYVDIDVHHGDGVEEAFFTTNRVMTVSFHKYGDFFPGTGHITDVGAGEGKHYAVNVP
LSDGIDDSTFRDLFQCIMKRVMEVYQPEVVVLQCGADSLAGDRLGCFNLSVKGHADCLRY
LRSFNVPMMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNDYYEYFGPDYNLHIEP
RSVENLNTTKDLENIKNMILDHLSTLEHVPNTQFHDRPSDPEAPAEKEEDMDKRPSQRSR
LWSGGAYDSDTEDPDMKTEANDLIANSIVKDESNDDL
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgtcaggcgaaggagcgtcgctgccgtctccggcgggtggcgaggacggccgc
cgccgtcgtgtcagctatttctacgagcccacgatcggcgattactactacgggcagggc
cacccgatgaagccgcaccgcatccgcatggcgcactcgctggtcgtccactatggtctc
caccgcctactcgagctctcccgccccttccctgcctccgaagccgacatcagccgcttc
cactccgaggaatacgtctccttccttgcctccgccactgggaacccgaacatcctcgac
ccccgcgccgtcaagcgcttcaacgtcggtgaggattgccccgtctttgacggtctcttc
cccttctgccaggcgtccgctggcggcagcatcggcgccgccgtcaagctcaaccgtggg
gacgccgacatcaccgtgaactgggctggcgggctccaccacgccaagaagggcgaggcc
tccggattctgctacgtcaacgacatcgtcctcgccatcctcgagcttctgaagttccac
aggcgtgtgctatatgtagacattgatgtccaccatggagatggtgtggaggaggccttc
ttcactacaaaccgagtcatgacggtttctttccacaagtatggggacttcttccctggt
actggacacattactgatgttggagctggtgaaggaaaacattatgctgtaaatgtcccc
cttagtgatggcattgatgactctacctttcgtgatctgttccaatgcatcatgaagaga
gtaatggaggtttatcagccagaggttgttgttctccaatgtggggctgactctttggcc
ggagataggttaggctgctttaatctgtctgtgaaaggccacgcagactgcctccgttac
cttaggtcattcaatgttcctatgatggttttagggggtggaggttacaccatcagaaat
gttgctcgctgctggtgctatgagactgcagttgccgttggggttgaacctgataacaag
ttgccttataatgattactatgagtactttggccctgactataatcttcatattgaacca
agaagcgtagagaatttaaatactacaaaagacctggagaatataaagaacatgatactg
gatcatctttcaacattagaacatgtcccaaacactcaatttcatgatagaccatctgat
cctgaagctccagcagagaaggaggaggatatggacaagagaccaagtcagcgcagcaga
ttatggagcgggggagcttatgattctgacacagaagatcctgacatgaaaactgaggct
aacgacttaattgccaattctatcgtgaaggatgaatcaaatgatgatttgtag
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