Brachypodium distachyon (stiff brome): 100835014
Help
Entry
100835014 CDS
T01717
Name
(RefSeq) DNA ligase 6 isoform X1
Organism
bdi
Brachypodium distachyon (stiff brome)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DRMBL
DNA_ligase_A_C
UBA_4
Lactamase_B_2
RMMBL
Motif
Other DBs
NCBI-GeneID:
100835014
NCBI-ProteinID:
XP_010232149
UniProt:
A0A0Q3GDH1
LinkDB
All DBs
Position
2:complement(46987820..47001260)
Genome browser
AA seq
1399 aa
AA seq
DB search
MASLLCSPATKSFSVDTSTLFLSSLASLSPAQTHPISAPSATPPVPATVPSTALIPNSSF
LVDAFRHAGDFSVAYFLSHFHSDHYAGLGPSWRRGLVFCSAPTARLLASVLSVPSELIVS
IDIGARITVDGWGVVAVDANHCPGAVQFLFTSPGPNTKRYVHTGDFRYTDSMRSDPNLLE
FVGADAVFLDTTYCNPKFTFPSQEESVEYVVNTIKQVKEESEAAGERVLFLIATYVVGKE
KILLEVARRCGCMIHVDSRKMKILTGLGFGGEKGVFTEDAAASDVHVTGWNILGETWPYF
RPNFVKMKEIMMERGYTKAVSFVPTGWMYETKKEGFAVRVKDSLKIHLVPYSEHSSYDEL
REYVKFLHPKQVIPTVGVDGGKLDGKEAIALKKHFAGLVDETANKHEFLSVFHPRSICAT
LNHEDVLAKCLRDQDGEEFASLPEINNASELSDSSNIKITEEMKKELSDFLPSWVSQDQI
LGLLMRSGGDVVQSASDFFERERDFFEEANVSNNEMSKSGGIHTSDHGPSADVSSQQEVT
LFSEKPMEPSTKLVNLTPVRMNSNLPKKERKRVSSTANKSKKKGRSAASTESGGRKQPTI
TNYFGRAMAAASKSETANKVTVDPYENIGEKENDTQLTDIVKTHEQGINQLLQIVDGSMS
RESAISLLEKTKGDVNVAVDMFYSKIQNNNVPVNDKSIVPQNTQNEIIDKNSNSDIIQSS
SQATPKMQNLYVQTSLAQADSMNISLPVEKYLPIEHACWTTGQPAPYLHLARTFDLVERE
KGKIKSTAMLCNMFRSLLALSRDDVLPAVYLCTNKISPGHENMELNIGGSLIISALVESL
GTSRSKIHEMYKTHGDLGDVAQECRQNQTLLAPPRPLSIRDVYSTLRKLSAISGGGSAGR
RKILVLHLIRSCREMEMKFLVRTLARNLRIGAMMKTILPALAHAVVLDGKCAKNTVVSLE
GIKSELQGLSSEVTEAYNVIPNMDLLVPSLLREGTTFAASSLAMLPGTPIPPMLARITNG
LTQALKLFDGRAFTCEYKYDGQRAQIHRLTGGSVQIFSRQMKDSTSRFPDLVNMIKELCS
PEVASFVLDAEVVGIDRNKGNKLMSFQELSSRERGSKHSSITIQNIKVDICVFVFDIMFC
NGERLLDYPLRQRRNYIHDYFQEKPGHFELAQQLIVEKNEASVDNSSTLHRMSSFFEKAC
QSSCEGIMLKTLDVDAGYSASKRCDSWLKVKRDYVEGLGDSLDLVPIGAWYGNGRKAGWY
SPFLMACYNPDYEEYQSVCRVMSGFSDEFYKEMKEFYSEERILPKKPVYYKTDELPELWF
SAEQVWEIRGADLTLSPVHHAATGIVHPSRGISVRMPRYIRSVPDRSPEDCSTATDVACM
FKAQTRKMEVSSDGPASSH
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccctcctctgctctcccgccacaaaatccttctccgtcgacacctccacgctc
ttcctctcctccctggcgtcactgtcgcccgcccagacccaccccatctccgccccctcc
gcgaccccgcccgtcccggccaccgtaccatccacagctctcatccctaactccagcttc
ctcgtcgacgccttccgccacgctggcgacttctccgtcgcctatttcctctcccacttc
cactccgaccactacgccggcctcggcccctcctggcgccggggcctcgtcttctgcagc
gctcccaccgcgcgcctcctcgcctctgtgctatccgtaccttcggagctcatcgtctcc
attgacattggcgcccgcatcaccgttgatggctggggcgtagtcgccgtcgatgccaac
cactgccctggtgccgtccagttccttttcacctcccctggaccaaacacgaagaggtat
gtacacaccggggacttccgctatacggattctatgagaagcgaccctaatctgctggaa
tttgtcggtgctgatgctgtatttctggacaccacctactgtaaccccaaatttacattt
ccttctcaagaggagtcagtggaatatgttgtgaacacaataaagcaggtgaaggaggag
agtgaggcagccggagagcgtgtgctgtttttgatcgcgacttatgttgtaggcaaagag
aagattttgctggaggttgcacggcgctgtgggtgcatgatacatgtggatagcaggaag
atgaaaattttgacaggactggggtttggtggtgagaaaggagtttttactgaggacgca
gcagcatcagatgtgcatgttacagggtggaatattttgggggagacatggccctatttc
cggccgaattttgtgaaaatgaaggagatcatgatggagagagggtacaccaaggcagtt
agttttgtgccgaccggatggatgtatgaaaccaagaaggaagggtttgctgttagggtg
aaggattcactcaagatacatcttgtgccttatagtgagcactcgagctatgatgagttg
cgggagtacgtgaagttcttgcacccaaaacaggtcatcccaactgtgggagtcgatggt
gggaagcttgatggtaaggaggcgattgctctgaagaaacattttgcgggattagtggac
gagacggcgaataaacacgagttcttgtcagtgttccatccaagatcgatatgtgctact
cttaaccatgaggatgtgctggctaaatgcttaagggatcaagatggggaggagtttgct
tccttaccagaaatcaataatgcttctgaattatcagacagttcaaacattaagattaca
gaggaaatgaagaaagaactatcagatttcctaccatcatgggtcagccaggaccaaatc
ctaggcctgttgatgaggtcaggtggtgatgttgttcaatcagcatctgatttttttgag
cgggaaagagatttctttgaagaagcaaatgtttctaataatgaaatgtctaagtcaggg
ggaatccacacttctgatcatggaccttctgctgatgtaagtagtcagcaggaagtaact
ttattttcagagaagcccatggagccttctacaaagctggtgaacttgactcctgtgaga
atgaactcgaatcttcccaagaaggaaaggaagagggtttctagcactgcaaacaagtca
aaaaagaaaggaaggtctgctgcctcaacagaatctggtgggcgcaaacagcccacaatt
acaaactattttggtagagcaatggcagctgcttctaaaagcgagaccgccaataaagta
acagtggacccatatgaaaacattggagagaaggagaatgacactcagttaactgatatt
gtaaaaacgcacgagcagggcataaaccagcttcttcagattgtagatggcagcatgtcc
agagaatctgcaatttctttacttgagaagacgaaaggagatgtcaatgtagcagttgac
atgttctacagtaaaatccaaaacaataacgtacctgttaatgacaagagtattgtaccg
cagaatactcaaaatgaaattatagataaaaatagtaactcagacatcattcaaagctct
tctcaggctactccaaagatgcaaaacctgtatgtacaaacttctttagcacaagcagat
tcgatgaatatatcattgccagttgaaaagtatctgccgattgagcatgcttgctggaca
acaggacagcctgcgccatacctgcatttggctcgcactttcgatctggttgagagagaa
aaaggaaagatcaaaagtactgccatgctttgcaacatgttcaggagtttgcttgcctta
tcacgagatgatgtgctacctgctgtttatctatgtactaacaaaatttctcccggccat
gaaaatatggaactaaacattggcgggagtctaattatttctgctctggtggagtcatta
ggaaccagcagatctaaaatacatgagatgtacaaaactcacggcgatcttggtgatgtg
gcccaagaatgccgtcaaaatcaaacgctacttgctcctcctcgtccactctcaatccgt
gatgtatattccacacttcgaaagctaagtgcaatatcaggtggtgggagtgctggaagg
agaaaaattcttgtcttgcatcttattcggtcttgcagagaaatggaaatgaaatttctt
gttagaacactggcacgtaacttgcgtattggggctatgatgaagacaattttacctgct
cttgcgcatgctgttgttcttgatggaaaatgtgcaaaaaacacagtggtatccttggag
ggcatcaaatcagaattgcagggcctttcaagtgaagttactgaggcatacaatgtcatt
cctaatatggatttgcttgtcccctctcttttgagagaaggcactacatttgcagcttcg
tccttagcaatgctacctggcacacctattccacctatgcttgcaagaattactaatggg
ctcactcaagcactgaaattgtttgatggtagagcatttacttgtgagtacaagtatgat
ggtcagcgtgcacagattcacagattaactggtggatccgtgcaaatattttcaaggcag
atgaaagattcaacttctcgatttcccgatctagtgaatatgatcaaagagttgtgcagc
cctgaggtggccagctttgtactggatgctgaagttgtgggaattgatagaaataaagga
aacaagctgatgtcattccaagaattgtcttcgagagagagagggagcaagcactcctca
attacaattcagaatataaaggttgacatctgtgtgtttgtttttgatatcatgttctgc
aatggagagaggctattggattaccctcttcgacaaaggagaaactatatccatgactat
tttcaggagaagccaggacactttgagttagctcagcagctaattgttgaaaaaaatgaa
gcatctgtggataattctagcactttacacagaatgagcagctttttcgaaaaggcatgt
cagtcttcttgtgagggtataatgttgaagactctagatgttgatgctggatactctgct
tccaagcgctgtgattcgtggttaaaggtcaagcgcgactatgtggaaggccttggtgat
agccttgacttagttcccatcggtgcatggtatggaaatggacggaaagctggatggtac
agcccttttcttatggcatgctacaatcctgactatgaagaatatcaaagtgtctgccgt
gttatgtctggtttctcagatgaattctacaaagagatgaaggagttttattctgaagaa
aggatactgcccaagaaacctgtttactacaaaacagatgagctgccagagttgtggttc
agtgctgaacaagtttgggagatccgaggtgcagaccttacattatcccctgtacaccac
gcggcaactgggattgtccatccgtcgcgtgggatctcggtgaggatgccgaggtacata
cgctctgttccagatcggagcccagaggactgtagcacggctacggatgttgcttgcatg
ttcaaagctcagaccaggaagatggaggtcagcagcgatggccctgccagcagtcactag
DBGET
integrated database retrieval system
