Brachypodium distachyon (stiff brome): 100841527
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Entry
100841527 CDS
T01717
Name
(RefSeq) pre-mRNA splicing factor SR-like 1 isoform X1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100841527
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bdi03041
]
100841527
Spliceosome [BR:
bdi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100841527
Complex C
U4/U6.U5 tri-SnRNP related factors
100841527
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRP38
Motif
Other DBs
NCBI-GeneID:
100841527
NCBI-ProteinID:
XP_003568813
UniProt:
I1HL97
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Position
2:complement(33868044..33871957)
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AA seq
407 aa
AA seq
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MEIQTSGKPINMLMEKVLCMNILSSDYFKELYRMKTYHEVIDEIYNQVDHVEPWMTGNCR
GPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAIGFLYLRYVADPKVLWTWYEPYLK
DDEEFSPGSNGHMTTMGVYVRDLILGQYYFDSILPRVPVPVIRQVTTNLEKMKLPTKLSG
VTGESRHVSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTITQDDYRRSSSPFC
RSGSREGPYDDRSSRDRETDRSSRDRGTDRSSRDRGTDRSSREKDYDSDIRDYRHHDRDS
RDRDYHRSRHSEERRDYRREHDNSRYRRYSHRSRSRSRSRSRSRNEHGSSLFGDKNKEKA
GAASSNLAKLKDLYGDVTEKKGDCDAKRLHHDSCAEEVIKLGGPRWK
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggagatacagacttcaggcaagccaattaatatgctgatggagaaggttctttgtatg
aacattctctcttccgattacttcaaggagctctacaggatgaagacctatcatgaggtc
attgatgagatctacaaccaagttgatcatgtggagccttggatgacaggcaattgcagg
gggccctccactgcgttttgtctcctctacaagttcttcacaatgaagctaaccgtgaaa
cagatgcatggtttgttgaagcatcctgactctccgtacattagagctataggattcttg
tatcttcgatatgttgcggatccgaaggttctatggacatggtatgagccttacttgaag
gatgatgaggaattctctcctggatctaatggtcacatgacaaccatgggtgtatatgtg
cgtgatcttatacttgggcagtactactttgatagtatccttccaagagttcctgttcca
gtaatccgtcaagtaacaaccaaccttgagaagatgaagctgccgactaagctttctggg
gtgactggagaatcccgtcacgtatcagaagatactgcccgtcggcccccttctgtaaaa
gcttctctgtcagtttcgtttggacagcgtgctccacaccgagcttccactagggattca
tccccagttcggcgaacaatcacccaagatgactatcgaagatcatcctcaccattttgt
cgtagtggaagccgggaaggtccttatgatgatcgttcgagccgtgaccgagaaactgac
aggtcaagccgtgaccgaggaactgacaggtcaagccgtgaccgaggaactgacaggtca
agccgtgaaaaggattatgatagcgacatcagagattatcgccatcatgaccgtgatagc
agggatcgtgactatcacaggtccaggcattcagaagaaagaagagattaccgaagggaa
catgacaatagcagatacagacgctacagccataggagcagaagccgtagtcgcagcagg
agccggagcaggaatgagcatgggtcaagcctgtttggggataagaacaaagagaaagct
ggggctgcctcgagcaatctagcaaagctgaaggatctgtatggtgatgtaaccgagaag
aagggcgattgtgatgccaaacgtcttcaccatgattcttgcgcagaggaggttatcaag
ctgggtggtcccagatggaaataa
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