Brachypodium distachyon (stiff brome): 100842951
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Entry
100842951 CDS
T01717
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100842951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bdi03400
]
100842951
DNA repair and recombination proteins [BR:
bdi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
100842951
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
100842951
NCBI-ProteinID:
XP_024315038
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Position
2:43737003..43743462
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AA seq
1093 aa
AA seq
DB search
MLSDDESTAAAPPGTATGVPDEEEEAELEDKDNLEEEQEEDEEDEWEEEEEEEREADLED
MVGEEEEEEQGKEEDEWELEEEEEEEHEETEEEESESEQDEEAAEEPRRGGPRNSAAAGR
YAHRAEDGEIFAKRLFEGLCISKAADTSAAGKPVAGRTRSRRRCLNTKLLRQGTYNKPYC
LDTPSESGSSEAEEGVNKTPPAPALSSSDEEIEADAGGHGRTAARKGRRRGKNPTPSDDD
SEEHRVGGRQGTAVRRRRWPKDNTAQCDHEEEEDDEAFVPFRRPKRSGAVPNPRDGYYDQ
QQQAGDAPFKKSSLILPKKRCGAGQERETYDDLLQSIFDEITNQQNGSAPLDDGSAPAQE
QSVPDTLPLIFSFGDEDQVVKEKTEQGKFEDLLWAEFDFALESTNACSHACQEEGEKSNG
DEIHADRATSCKRGKHDLIMDEQIGIRCKHCDFIDLEIRDVFPSMVKFSIEREPAMSLNL
DLFCEDIIKSMGYEGTSHFDIHESGLVWDLIPGVREHMFPHQREGFEFMWKKLAGGIDIQ
QVKHTVNTDSTSGCVISHAPGTGKTRLAITFVQSYLELFPWCRPVIIAPRGMLATWEQEF
KKWNVKLPFHLLSSSGIHWDEDKTIKKLVAQDESLGQKLSMNKLSQKSRLMLKLASWYEG
SCIIGLSYSLYRNLAKGEDMDGETVRNLLLKNPGLLVLDEGHTPRNKKSLIWKVLAEVST
EKRIILSGTPFQNNFLELYNILCLVKPKFARDFACTRLNKKDFSSKRTCQSRATHHLEED
EGKEFWKSLRMSNITDDHLSEIREKLDPFVHIHNGDILQKSLPGLKESVVILNPLPHQKE
IITMMEKSAGKGFLDAEYKISLASIHPFLLTSVKLSDEEASIVNKLKSSRLDPCEGVKTR
FVLEIVRLCKPLKERVLVFSQYLEPLSLIMDQLTKKFNWTEGKEILLMSGNVRVKQREAL
MEAFNDMNSEARVMLASTKACCEGITLVGSSRVVLLDVVWNPSVGRQAIGRAYRIGQEKI
VYTYNLIAEGTKEKIKYDRQAKKDHMSKLLFTKEPQAAGCNLTPELIFDDRILEAMTAHE
ELKDMFVQILPSH
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atgttaagcgacgacgagtccactgctgctgcgccgcccggcacggcgacgggtgtgccg
gatgaggaagaagaagcggagctggaggataaggataatctggaggaggagcaagaggaa
gatgaggaagatgaatgggaggaggaagaagaagaggaacgagaagccgatctggaggat
atggtcggcgaagaggaggaggaagaacaggggaaagaggaagatgaatgggaattagaa
gaagaagaggaagaagaacacgaggagacggaagaggaggaatctgaatcagagcaagat
gaagaggcagccgaggaaccgcgccgtggcgggcctagaaattccgcggcggctggtcgt
tatgcgcacagggcagaggacggcgagatctttgccaagagactgttcgaagggttgtgc
atctccaaggcggcggacacctcggctgcgggcaaaccggtggccgggcggacgcggtca
cgacggcgatgcctcaacacgaagctgcttcggcaaggcacctacaacaagccatactgc
ctcgacacgccgtcagagtcaggctcgtccgaggcagaggagggtgtcaacaagacgcct
cctgctccagcgctgtcctccagtgatgaggagattgaagcggacgccggcggccatggt
agaacggcggccaggaagggaaggcgccgagggaaaaaccctacccccagtgacgacgat
tccgaggagcaccgcgtcggcggcagacaaggaacggcggtgagaaggaggagatggccc
aaggataatactgctcaatgtgaccacgaggaggaggaggacgacgaagcctttgttcca
ttcaggaggccaaagagatcaggagcagtccccaatcccagggatggatactacgaccaa
cagcaacaggccggcgatgctcccttcaagaagagctccctgattcttcccaagaaacgg
tgcggtgccggccaggagcgagagacctacgacgatctgctgcagtccatcttcgacgag
atcacgaaccagcagaacggctctgctcctctggacgatggctctgcacctgcgcaagaa
cagagtgtccctgatacgttgcccctgatattctccttcggggacgaggaccaggtggtg
aaggagaagacggagcagggcaagtttgaggaccttctgtgggcagaatttgactttgcg
ttggaatccaccaatgcttgctctcatgcctgccaggaggagggtgaaaagagcaatggg
gatgaaattcacgcagacagagcaacttcatgcaaacgagggaaacatgatctcattatg
gatgaacaaataggaatcagatgcaaacactgtgattttatcgatcttgaaattagagac
gtatttccatctatggtgaagttttcaatagaaagggaaccagcaatgagtctcaatttg
gatttgttctgtgaggatatcataaaatcaatgggatatgaaggaacaagtcattttgat
attcatgagagtggccttgtctgggatctcattccaggggtccgggaacacatgttccca
caccagcgggaaggattcgagttcatgtggaaaaaacttgcaggaggaattgacattcaa
caggtgaaacataccgtgaatactgatagtacgagtggctgtgtgatttctcatgctcca
gggacaggcaaaacccgtctagcgatcacatttgtgcaatcttacttggagcttttcccg
tggtgcaggccagtgataattgctcccagggggatgctggctacatgggagcaagaattt
aaaaaatggaacgtgaagctccctttccatctactgagttcttctggaatccattgggat
gaagacaagaccatcaagaaactggttgcacaggacgaaagtttgggccagaagttgtcc
atgaacaaattgagccagaaatctaggctaatgttgaagttggcctcctggtatgagggc
agttgcatcattggtctaagctattcactttacaggaaccttgcaaagggtgaagacatg
gatggagaaacggtgaggaatctgcttctcaagaatcccggcttgttggttctcgatgaa
gggcacacaccgaggaacaaaaaaagtctaatttggaaggttcttgcagaagtcagcacc
gaaaagcggataattctctcagggactccattccagaacaacttcctggagctttataac
atcttgtgcctggttaaaccgaaatttgcaagagattttgcctgtacaagactcaacaaa
aaagactttagttctaagagaacctgccaatcaagagcaacacatcatttggaagaggat
gaaggcaaggaattctggaaatcattaaggatgagtaacatcactgatgatcatctcagt
gaaatccgggaaaaactggacccttttgtgcacatccataatggtgacattcttcagaag
tcacttccaggattgaaagaatctgtcgtgattcttaatcctcttcctcatcagaaagaa
attatcacaatgatggagaaaagtgcaggaaagggttttcttgatgcagaatacaagata
tcccttgcatctatacacccgttcctcctcacaagtgtaaaattgtcagatgaagaagca
tctattgtgaacaagctgaagagttcacggctggatccatgtgaaggagtaaagacgagg
tttgttctagagatcgtccgtctttgcaaaccattgaaagaaagagtgcttgtgttcagt
cagtaccttgaaccactgtccctaatcatggatcagctaactaaaaagttcaactggacc
gaaggcaaagaaatcctgctgatgagtggaaatgtccgtgttaaacaacgtgaagccttg
atggaggccttcaacgacatgaacagtgaggccagggtgatgcttgcatcaacaaaggcc
tgctgtgaaggaataacacttgtcggctcatcacgagtagttctcctcgatgtcgtctgg
aacccttctgttggaaggcaggcgattggccgagcctatagaataggccaggagaagatc
gtgtacacatacaatctgatcgcagaaggaacaaaggagaagatcaaatatgacagacaa
gccaagaaggatcacatgtccaaattgctgtttacaaaggaaccacaggctgcagggtgc
aacctgacaccagaactgatattcgatgataggatattggaagcaatgactgcacacgaa
gagctcaaagacatgtttgtgcaaattctcccttcacattga
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