Brachypodium distachyon (stiff brome): 100846277 Help Entry 100846277         CDS       T01717                                  Name (RefSeq) THO complex subunit 2 isoform X1   KO K12879   THO complex subunit 2 Organism bdi  Brachypodium distachyon (stiff brome) Pathway bdi03013   Nucleocytoplasmic transport bdi03040   Spliceosome Brite KEGG Orthology (KO) [BR:bdi00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     100846277   09122 Translation    03013 Nucleocytoplasmic transport     100846277  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:bdi03019]     100846277    03041 Spliceosome [BR:bdi03041]     100846277 Messenger RNA biogenesis [BR:bdi03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     TREX complex      100846277 Spliceosome [BR:bdi03041]  Complex C   Other components    EJC/TREX     100846277  Other splicing related proteins   Spliceosome associated proteins (SAPs)    TREX complex     100846277 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Tho2 THOC2_N Thoc2 HetE-N RNase_Zc3h12a_2 Motif Other DBs NCBI-GeneID:  100846277 NCBI-ProteinID:  XP_010237114 UniProt:  I1GTJ1 LinkDB All DBs Position 1:complement(20190864..20215554) Genome browser AA seq 1774 aa AA seqDB search MSPPLQAPDYKYVTEECLREWKSQSAAGFRLPDPVPMARFLYELCWAIVRGDLPPQKCRV ALDSVVFVEEAWHEESGSVLADIVAHLGQDITISGEYRNRLVKMTKSFVESSLIVPRLLQ ERCEEEFLWEVEQSKSKGQDLKAKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQVG SDLACQNASSATISIIKSLIGHFDLDPNRVFDIVLECFELYPDNSTFYQLIPLFPKSHAA QILGFKFQYYQQLDVNSPVPSGLFRIAALLVKSGLIDLDNLYAHLLPNDDEAFEHFGSFV SRRIDEATKIGKINLAATGKDLMDDEKQEITIDLYTALEMENDIIEERAPEIEKNQKLGL LLGFLSVHDWDHAQLLFERLAQLNPVEHIEICDGLFRVIEKTISSAYTIYCQAHHKIPGN IDTHMVEASSVSSPSYLVDLPKEFFQMLAACGPYLHRDTQLFQKVCRVLKVYHVRSKDSA RTAGVMSSESRVEEALGSCLLPSLQLIPANPAVDMEIWGVLSLLPYEVRYRLYGEWEKDT EQNPIVLAARQTAKLDTRRLLKRLAKENLKQLGRMVAKLAHANPMTVLRTIVTQVEAYRD MINPVVDAFKYLTQLEYDILQYIVIERLAQGGREKVKDDGLNLSDWLQCLASFWGHLCKK HLSMELKCLFQYIVNQLKKGLGTELVVLEELIQQMANVQYTENMTDEQVDAMAGSETLRL QSSLFGSTRNYKVLNKSMNKLRDSLLPKDEPTLAIPLLLLIAQHRSKIIINADATYIKMV SEQFDRCHGILLQYAEFLSSAVTPAIYIQLIPPLEDLVYKYHIEPDVAFLIYRPVMRLFK SANGGDTCWPLDDNEEGESVSCDDMILHGDSSQKLIMWSDLLNTIRTILPTKAWIALSPE LYATFWGLTLYDLHFPKDRYDAEIKKLHDNLKQLEDNSDNSSIAISRRKKDKERIQDLLD KLNNESEKHQQHVVSVFQRLTREKDKWLSSSPDALKINMEFLQRCVYPRCVLSMQDAVYC ATFVQTMHSLGTPFFNTVNHIDVFICKTLQPMICCCTEYEAGRLGRFLHETLKMAYHWKS DESVYERECGNKPGFAVYFRFPNSQRVSYTQFIKVHWKWSGRITKVLNQCMESKEYMEIR NALIVLTKITSIFPVIRKSGVNIEKRVAKLKGDEREDLKVLATGVAAALAARKSSWLSEE EFGMGHLDTKPVPAKPIPGNHSSDPSTAKDQIVRAKSTEGRHERTENAMKPDAQHKNNPL PANGSDSQIPSSVAQGKVSGVARGSDEPPKLLSDEGVKVLKPTTESETRVSQKRATHNAA KVSKHDAVKEHAKSGKSTSRGLNQQASSLPIDRQVLSQAADGVLDTNPTSSFVGTNGNVH LVPRKVSASSQRSTVLAAHSGGTANPTGEGESTDLIDSTVKQQKRSVPAEEQERISKRRK GDIQGRDGELTEQHTDKERKLDTRSADRFRSADHERGASEEQNIIRTDKLKEKFDDKHDR DPREKADQLERRRGEDVIERPLDRASDRRERSIDRMQDMAPEKGREDRNKEDRNKAKHAE PSVDRAHSSDERFPGQSLPPPPPLPASFVPQSVGSNRRDEDSGRRGGSTRHTQRLSPRRD EKERWHLEENASLLQDDGKHRREEDLRDRKREDRDVSSSKVDDRDRDKVSTMKEDSDPNS ASKRRKIKREQSALEAGEYAPSAPQPPSLGAGGLQLEIRERERKGVISQHRPSHADDLPR ITSKTSRREVDQTLEREWEEEKRPRTEAKRKHWK NT seq 5325 nt NT seq  +upstreamnt  +downstreamnt atgtcgcctcctctccaggcgccggactacaagtacgtcaccgaggagtgcctccgcgaa tggaagagccagtccgccgccggcttccgcctccccgatccggtccccatggcgcggttc ctctacgagctgtgctgggcgattgtgcggggcgaccttccgccgcagaagtgccgggtg gcgctggattcggtggtgttcgtggaggaggcatggcacgaggagtccggctctgtgctc gcggacatcgtcgcccacctagggcaggatattacaatttctggcgagtatcgcaaccgc cttgtcaaaatgactaagtcatttgtggagtcttcgttgattgtgcctaggcttcttcaa gagcgatgtgaagaagagttcctatgggaggttgagcagagtaagtccaagggccaggat ttaaaagccaaagaggtcagagtcaacacgcgacttctttatcagcaaactaaattcaac cttttaagagaggaaagcgagggctacgccaagttggtcaccctactttgtcaagttggt tcagatttggcttgccaaaatgcttcttcagctactatcagcattataaagtcattaatt gggcactttgacctggacccgaatcgcgtatttgacatagtgttggaatgttttgaactc tatccagataacagtaccttttaccagcttatacctctttttccaaagtcccatgctgct caaattttagggttcaaattccaatactatcaacaattggatgtcaacagccctgttcca tctggtcttttccgaatagcagccttgttggtgaaatctggtcttattgatcttgataat ctctacgcccatttacttccaaatgatgatgaggcattcgagcattttgggtcctttgtt tcaaggagaattgatgaggctactaaaatcggcaaaataaatcttgctgctactgggaaa gaccttatggatgatgagaagcaagaaataacaattgatttgtacacagcattggagatg gagaatgatataattgaggagcgagcccctgagatagaaaagaaccagaagcttggactt cttcttggtttcctctcagttcatgattgggatcacgcccagctactctttgagcgtctc gcacagctaaatcctgtcgagcacattgaaatttgtgatggattatttagagttattgaa aagactatttcatcagcctacactatatattgtcaagcacatcataaaatccccggtaac atcgacactcacatggtagaagcatcatctgtctcttcaccaagttatttggttgatctg ccgaaagagtttttccaaatgcttgctgcttgtggaccgtaccttcatcgtgacacacaa ttatttcagaaggtttgcagagtgctaaaagtgtatcacgtccgatcaaaagactcagca cgtacagctggtgtaatgtcttcagaatctcgtgtcgaggaagcacttgggtcatgcttg cttccttcattgcagcttatacctgctaatcctgctgttgatatggagatatggggagtt ctttcccttcttccttacgaggtacgctatcggttgtatggtgagtgggagaaggacact gaacaaaatccaattgtccttgctgcaaggcagacagcaaagctcgacaccagaaggctc ttaaaaaggctggccaaggaaaatcttaagcagcttggccgcatggtggctaaacttgct catgcaaatccaatgaccgtacttcggacaattgtcacacaggttgaagcatacagggac atgataaatcctgttgtggatgcttttaaatacttgacccagctggagtatgatatcttg caatatattgtaattgaacggttggctcaaggtggtcgtgagaaagtaaaagatgatggt cttaatctgtcagactggcttcagtgtcttgcatcattttggggacacctctgcaagaag catctttccatggagctaaaatgccttttccaatacattgttaatcaactgaagaaagga ttgggcaccgagcttgttgtactggaggaactgattcagcaaatggcaaatgtacagtat actgagaacatgacagatgaacaggttgatgctatggcagggagtgaaacattgcggctt caatcttcactatttggatccacaaggaattataaggtcctgaataagtctatgaataag ttgcgggattctttgcttccgaaagatgaaccaacacttgctattcctctattactgctt attgctcagcatcgatctaagattataataaatgcagatgctacatatatcaaaatggtc agcgagcagtttgatagatgtcatggtatactgcttcagtatgctgagtttctttcaagt gctgtaactccagcgatctatattcaactaatacctccactggaagatttggtttataaa tatcatattgagccagacgttgctttccttatataccgcccggtgatgaggcttttcaaa agcgcaaatggcggtgacacctgttggcctctggatgacaatgaagaaggggagtctgtg tcttgtgatgatatgatcttgcatggtgattcatctcagaagttaatcatgtggtctgat cttcttaacacaatccggacaattttgccaacaaaagcctggatcgctctttcacctgag ttatacgctactttctggggtttaacactatatgatcttcattttccaaaagatcgttat gatgcagaaatcaagaagctgcatgacaatctgaaacaacttgaagataactcagataat tctagcattgcaatatcacgacgtaagaaggataaggagagaatccaagatttacttgac aaattgaacaatgaatctgagaagcaccaacaacatgtcgtatcagtgttccaaaggcta acccgtgaaaaggacaagtggctgagttctagtccagacgcactgaagattaacatggaa tttctccagcgttgcgtatacccacgctgtgttcttagcatgcaggatgctgtgtattgc gctacatttgtccagacgatgcattcacttgggactccatttttcaacacggtcaatcat attgatgttttcatctgcaagacactgcagccaatgatctgttgttgtacagaatatgag gcaggcaggcttggaaggtttcttcacgagacactgaagatggcctaccattggaagagt gatgaatcagtatatgagcgtgaatgtggaaataagccgggatttgctgtgtacttcaga tttccaaatagtcaacgtgtgtcttatactcagtttattaaagttcattggaaatggagt ggaagaattacaaaggtgcttaaccaatgtatggaatcaaaagaatacatggaaatcaga aatgcccttattgtgctcacaaagattactagtatttttcccgtgattcgaaaaagcggt gtcaatatcgagaaaagggttgcaaagctaaagggggatgagagggaagatctgaaagta ctggccactggtgtagctgctgctttggcagctcgcaagagttcatggctatctgaagaa gagtttggcatgggtcaccttgatacaaagccagtgcctgcgaaacctattcctggaaat cactcgtcagatccctcgacagcaaaagatcagattgttcgtgcgaaatctacagagggt aggcatgagagaacagaaaatgccatgaagcctgatgctcaacataagaacaatcccttg cctgcaaatggatctgatagtcaaataccatcttccgttgcacaaggaaaagtttcaggg gttgcacgtggttcagatgaacctccaaaacttctctctgacgagggagttaaggttttg aagcctactacagaatctgagacaagagtatcacaaaagcgtgccacacacaatgctgca aaggtatctaagcatgatgcagtgaaggaacatgcaaaatctgggaaatctaccagcagg ggtcttaatcaacaagcctcttctcttcctatcgatagacaagtattgtctcaggcagct gatggtgtgctggatactaatcctactagttcgttcgttggcaccaatggtaacgtacat ctggtgccgcgaaaggtatcagcatcttctcaaagatcaacagtgttggctgcacatagt ggcggaacagctaatcccaccggtgaaggtgaatctactgacttgattgactctaccgtg aaacagcaaaaaagatctgttccagctgaagaacaagagagaataagtaaacggaggaaa ggggacattcaaggccgtgatggtgagttgacagaacaacacacagacaaagaaagaaaa ttggacacacgatcagcagatagatttcgctccgcggatcatgagaggggtgctagtgag gaacagaacataattaggacagacaaattaaaagaaaagtttgatgataaacatgacaga gatcccagagaaaaagcagaccaacttgagaggcgccgtggggaagacgtgattgagaga ccactggacagagcatcggataggagagagcgttctattgacaggatgcaagacatggct cccgaaaaaggaagagaagacaggaataaggaggatagaaacaaagctaagcatgctgaa ccctccgtagatcgagcacatagttctgatgaacggttcccagggcaaagcttaccaccg cctccacctcttccagcaagttttgtaccccaatcagttggttctaaccgaagagatgaa gatagtggccgaagaggtggcagcacaaggcatactcaacgattgtctcccaggcgcgat gagaaagaaaggtggcatttggaggagaatgcttcgttgttgcaggatgatgggaaacac agaagagaggaagatctccgggatagaaagcgtgaagatagggatgtttcatcaagcaag gtagatgacagggatagggacaaagttagtactatgaaggaggacagcgaccctaacagt gcttccaaacggcgaaagattaagagagagcagtctgctttagaagctggggaatatgca ccttctgctccacagcctcccagccttggagctggtggcttgcaacttgaaatccgagag agagaaagaaagggtgttatctcacagcatcggccatcacatgctgatgaccttcctagg ataacaagcaagacaagccgtagagaggttgaccaaacgctcgagagagaatgggaagag gaaaagaggcctagaactgaagcaaaaagaaagcattggaagtag

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