Burkholderia dolosa: AK34_1621
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Entry
AK34_1621 CDS
T03793
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bdl
Burkholderia dolosa
Pathway
bdl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AK34_1621 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdl03019
]
AK34_1621 (rnr)
03016 Transfer RNA biogenesis [BR:
bdl03016
]
AK34_1621 (rnr)
Enzymes [BR:
bdl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AK34_1621 (rnr)
Messenger RNA biogenesis [BR:
bdl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AK34_1621 (rnr)
Transfer RNA biogenesis [BR:
bdl03016
]
Prokaryotic type
tRNA degradation factors
AK34_1621 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
RNase_II_C_S1
HTH_12
CSD
Motif
Other DBs
NCBI-ProteinID:
AJY14362
LinkDB
All DBs
Position
1:complement(1724795..1727254)
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AA seq
819 aa
AA seq
DB search
MSKYPYPIPSREEILGVLRTSDAPLAANDIAEALSIKRQEREGFFRRVAAMERDGQIRLD
KRGHYQLTHPSNFVAGRVQGHRDGYGFVIRDDGQDDLFLPNGEMQKVMHNDRVLARIVGY
DRRGRPEGHVVEVTERANKRVIGRLLNENGALIVAPEDKRIGHDILITQNVKKAKVGQVV
VVELTDFPSRHSQPLGRVVEVLGDIDDPGMEIEIAVRKYGVPHQFSQAALDEAAALPDKV
RLADLRFRVDLRDVPLVTIDGEDARDFDDAVYCEPTKVGRGDGFRLIVAIADVSHYVQPG
SGLDADALERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLACDIVITARGEIKAYQ
FYPAVIHSAARLTYTEVAAVLSNTKGPEAARRAELLPHLQNLYGVYKALFTARQKRGAID
FDTTETYIVCNAQGKIEQIVPRHRNDAHKLIEECMLAANVCAADFLKRHKHPGLYRVHAG
PTPEKLENLRAFLRGMGLSLGGGDKPHASDYAALMAQIRDRPDAQMLQPMLLRSMQQAVY
SPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIYAILSGKKYVPKAPDGFELNTALSPR
ARAMQQADDEARGRSRANTAIWEELGLHCSSNERRADEASRDVEAWLKCYFMRDKLGEEY
GGMVNGVTSFGIFVQLDTLFIEGLVHVTELGSDYFQYDEIKNELRGERTGIRYRLSDRVR
VQVSRVDLDARKIDFRLVRDTPVKAPRPALAPAAAGVERDGPRVRALPPAEEPAPRRKKA
ASAPTAAVKEARAARAAAKKKGGSAAKPVAKKARARKKY
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaaatatccgtaccccattccgagccgtgaagaaattctcggcgtgctgcgtacg
agcgacgcgccgcttgccgccaacgacatcgcggaagcgctgtcgatcaagcgccaggag
cgcgaagggttcttccggcgtgtcgccgcgatggagcgagacggccagatccggctcgac
aagcgcggccactatcagctgacccatccgtcgaacttcgtcgccggccgcgtgcagggg
catcgcgacggctacggattcgtgattcgggacgacggccaggacgacctcttcctgccg
aacggcgaaatgcagaaagtcatgcacaacgatcgcgtgcttgcgcgaatcgtcggctac
gatcgccgcggccggccggaagggcatgtcgtcgaggtcaccgagcgcgcgaacaagcgc
gtgatcggccggctgctgaacgagaacggcgcgctgatcgtcgcgccggaagacaagcgc
atcggccacgacatcctgatcacgcagaacgtgaagaaggcgaaggtcggtcaggtcgtc
gtcgtcgagctgacggacttcccgagccgtcattcgcaaccgctcgggcgcgtcgtcgaa
gtgctcggcgacatcgacgatccgggcatggagatcgagatcgcggtgcgcaagtacggc
gtgccgcaccagttcagccaggccgcgctcgacgaggccgcggcgctgcccgacaaggtg
cggctggccgacctgcggttccgcgtcgacctgcgcgacgtgccgctcgtgacgatcgac
ggcgaagatgcccgcgatttcgacgatgccgtgtattgcgagccgacgaaggtcggtcgc
ggcgacggcttccgcctgatcgtcgcgatcgccgacgtatcgcactacgtgcagccgggc
agcgggctcgatgccgatgcgctcgagcgcagcacgtcggtctatttcccgcggcgcgtg
atcccgatgctgcccgagaagctgtcgaacgggctgtgctcgctgaatccgcaggtcgat
cgctgcgtgctcgcgtgcgacatcgtgatcaccgcgcgcggcgagatcaaggcgtaccag
ttctatccggcggtcatccattcggcggcccgcctcacgtacaccgaagtcgcggccgtg
ctgtcgaatacgaaggggccggaggcggcgcgccgcgcggagctgctgccgcatctgcag
aacctgtacggcgtgtacaaggcgctgttcaccgcgcgtcagaagcgcggcgcgatcgac
ttcgacacgaccgagacgtacatcgtctgcaatgcgcagggcaagatcgagcagatcgtg
ccgcgccatcgcaacgacgcgcacaagctgatcgaggaatgcatgctggccgcgaacgtg
tgcgcggccgatttcctgaagcgtcacaagcatccgggcctgtaccgcgtgcacgcgggg
ccgacgccggagaagctcgagaacctgcgcgcgttcctgcgcgggatgggcctgtcgctc
ggcggcggcgacaagccgcatgcgagcgactacgcggcgctgatggcgcagatccgcgat
cggcccgacgcgcagatgctgcagccgatgctgctgcgttcgatgcagcaggccgtctac
agcccggacaacatcggccacttcggtctcgcgtacgaggcgtacgcgcacttcacgagc
ccgatccgccgttatccggatctgctcacgcatcgtgcgatctacgcgatcctgtcgggc
aagaaatacgtgccgaaggcgcccgacggtttcgagctgaacaccgcgctgtcgccgcgc
gcacgcgcgatgcagcaggccgacgacgaagcgcgcggccgctcgcgcgcgaacacggcg
atctgggaagagctcgggctgcattgctcgtcgaacgagcgtcgcgccgacgaagcgtcg
cgcgacgtcgaggcatggctgaagtgctatttcatgcgcgacaagctcggcgaagaatac
ggcgggatggtgaacggcgtcacgtcgttcggcatcttcgtgcagctcgacacgctgttc
atcgaaggactcgtccacgtgacggagctcggctcggactacttccagtacgacgagatc
aagaacgaattgcgcggcgagcgcacgggcatccgctatcgcctgtcggaccgcgtacgc
gtgcaggtgagccgcgtcgatctcgacgcgcgcaagatcgacttccgcctcgtgcgcgat
acgccggtgaaggcgccgcgcccggcgctcgcgccggctgcggcgggcgtcgagcgcgac
ggtccgcgcgtgcgcgcgctgccgccggcagaggagcccgcgccgcgtcgcaagaaggcc
gcgagcgcgccgaccgcggcggtgaaagaagcgcgtgccgcgcgcgcggctgcaaagaag
aagggcggctcggcagcgaagccggtcgcgaagaaagcgcgcgctcgcaagaagtattga
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