Bifidobacterium dentium JCM 1195 = DSM 20436: BBDE_0005
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Entry
BBDE_0005 CDS
T04222
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
bdn
Bifidobacterium dentium JCM 1195 = DSM 20436
Brite
KEGG Orthology (KO) [BR:
bdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bdn03032
]
BBDE_0005
03400 DNA repair and recombination proteins [BR:
bdn03400
]
BBDE_0005
Enzymes [BR:
bdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
BBDE_0005
DNA replication proteins [BR:
bdn03032
]
Prokaryotic type
DNA Topoisomerases
BBDE_0005
DNA repair and recombination proteins [BR:
bdn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BBDE_0005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
HATPase_c
Toprim
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
BAQ25999
LinkDB
All DBs
Position
5094..7190
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AA seq
698 aa
AA seq
DB search
MADLDADSLNESAENTQEDQIQNDQLEDAQLDDSLSPEHYDASDLRVLEGLEAVRIRPGM
YIGSTGPRGLHHLVYEIVDNSVDEALAGYASHIEVTILPDGGVRVVDDGRGIPVDEVPGE
GVSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYV
DQKPTARLAKGEPMAEGESTGTSVTFWADGKIFETTTYDFETLRNRFQQMAFLNKGLKLS
LTDLREPDQAGDEVAGELDETETKHQTVTYQYNEGIKDYVDYLVKSRKATPVEEDVIDFE
AEDLKIGISAEIAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLINRYAREKNI
LKDKDENLSGDDVREGLTAVVSVKLTTPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFD
AHPSEAKNIIQKAIEASRARIAAKKARENTRRKSIFESAGMPDKLKDCQSNNPEECELFI
VEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSETIESLITAVGGGYGEDF
DLSKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTKGA
HDFVYTDAERDRVLAEGKAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVQ
IEDAAAADETFSMLMGDEVEPRRLFIQRNANKVSWIDA
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
gtggcagaccttgacgcggattcgctgaacgaatcagctgaaaacacgcaggaagatcag
attcagaacgatcagctcgaagatgcgcagctcgacgactcattgtcgcccgaacactat
gacgcctccgatctgagggtgctggaaggccttgaggcggtgcgtatccgtccgggcatg
tatatcggctccaccggcccacgcggcctgcaccatctggtctatgagatcgtcgacaac
tccgtcgatgaggctttggccggctatgcgtcgcatatcgaggtgacgattctgccggac
ggtggcgtacgcgtggtcgacgacggacgaggcatcccggtcgacgaagtgcctggcgag
ggcgtttccggcgtggagaccgtgatgaccaagctgcacgcaggcggcaagttcggcggc
ggcggatatgcggtctccggcggtctgcacggcgtgggcatctccgtagtgaatgcgctg
tccacccgcgtcgacatcgaagtgcgtcgtcagggcttccactggacacagacctacgtc
gaccagaagccgaccgcccgtctggccaagggcgagccgatggccgaaggtgaatccacc
ggtacctccgtgaccttctgggccgacggcaagattttcgaaaccaccacctacgatttc
gaaaccctgcgcaatcgtttccagcagatggccttcctgaacaagggactgaagctctcc
ctgaccgatctgcgcgagcctgatcaggcgggcgacgaggtcgccggtgagcttgacgag
accgaaaccaagcatcagaccgtcacctaccagtacaacgaaggcatcaaggactacgtc
gactatctggtcaagtcccgcaaggcgacgccggtcgaagaggacgtcatcgatttcgag
gcggaagatctgaaaatcggcatttccgcggaaatcgccatgcagtggaccaccgcctac
tcagaagccgtgcacaccttcgccaacaccatctccaccaccgaaggcggcacccacgag
gaaggtttccgagcggcgttgacctcgctgatcaaccggtacgcccgagagaagaacatt
ctcaaggacaaggatgagaacctctccggcgacgatgtgcgcgaaggcctgaccgcagta
gtgtccgtcaagctcacaaccccgcagttcgaaggccagaccaagaccaagctcggcaat
tccgaggccaagaccttcgtgcagcgcgtgatgaccgacaagcttggcgattggttcgac
gcccacccgagcgaagccaagaacatcatccagaaggccatcgaggcctcccgtgcgcgc
atcgcggccaagaaggcgcgtgagaacacccgtcgtaagtcgattttcgaatcggccggc
atgcccgacaagcttaaggactgccaatccaacaatcctgaggaatgcgagctgttcatc
gtggagggtgattccgcaggcggctccgcaatccaagggcgcaacccgatcacgcaggcc
attctgccgttgcgaggaaagatcctcaataccgagcgcgccagcctggaccgtatgatg
aagtccgaaaccatcgaatcgctgatcaccgccgtcggcggcggatatggcgaggatttc
gatctgagcaaggtacggtatcacaaggtcatcatcatggccgatgccgatgtggatggc
gcacatatcgccaccctgaatctgacactgttcttccgctacatgcggccgatgatcacc
gctggctacgtgtacgtggccatgccgccgctgtaccgtctgaagtggaccaagggtgcg
cacgactttgtgtacaccgacgccgaacgtgaccgtgtgctcgccgaaggcaaggccgcc
ggccgtcagttgccgaagggtgagggaatccagcgctataagggtctgggtgagatgagt
tatcaggaactgtgggaaaccaccatggatccggaacatcgcatcctgaagcaggtgcag
atcgaggatgcggccgcggccgacgaaaccttctccatgctcatgggagacgaagtcgaa
ccacgccgtctgttcatccagcgcaatgccaacaaggtcagctggatcgacgcataa
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