Betaproteobacteria bacterium UKL13-2: AEM42_15135
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Entry
AEM42_15135 CDS
T04342
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
beb
Betaproteobacteria bacterium UKL13-2
Pathway
beb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
beb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AEM42_15135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
beb03021
]
AEM42_15135
03400 DNA repair and recombination proteins [BR:
beb03400
]
AEM42_15135
Enzymes [BR:
beb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AEM42_15135
Transcription machinery [BR:
beb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AEM42_15135
DNA repair and recombination proteins [BR:
beb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AEM42_15135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AMS33396
UniProt:
A0A142LMF0
LinkDB
All DBs
Position
complement(3324198..3328403)
Genome browser
AA seq
1401 aa
AA seq
DB search
MKALLDLFKQVTQEEEFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVVDGGMTPLNKCQLLTEDDYLAKVEEYGDDFTALM
GAEGIRELLRKLDLPGELEQLRKDLGNTGSEAKIKKIAKRMKVLEAFSKSGIKPDWMVLE
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKKMALELFKPFIFHKLEVLGMATTIKAAKRMVEAEEPIVWDILEDVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPISLEAQMEA
RTLMLASNNVLFPASGEPSIVPSQDIVLGLYYMTRERVAAKGEGSMFINVAEAQRAYETG
EVSLNAKVLVRIAETDKDEKGEVFARVKRYETTVGRAILSEILPPGLPFPHINKALKKKE
ISKLINAAFRRCGIRETVIFTDQLMYTGFTYATKAGLSISIDDMLVPPQKKDIISTAEQE
VKEIEAQYTSGLVTQGERYNKVVDIWGRAGDQVAKAMMEQLGSEPVTTLDGKQTTQESFN
AIYMMADSGARGSVAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVVTEDDCKTENGLAVKALVEGGEVVEALRERIL
GRVAQGDIIHPETGKVLVTSGTMMDEDAMDEIDAAGIDEVKVRTPLTCDTRYGLCAKCYG
RDLGRGSMVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTAASSSVEAKSAGTLKF
MPTMRHVLNARKEVIVISRSGEIIIADDAGRERERHKVPYGAMMAIKDGDKIKAGQALAT
WDPHTRPIITEYAGEVRFENVEEGVTVAKQIDETTGLSSLVVIDPKRRGSAATKGLRPAV
KLVDASGKEIKQNNSDAPVAYTFQIGSIITVKNGQQVGVGEVMARIPQESSKTRDITGGL
PRVAELFEARSPKDAGVLAEVTGTVSFGKDTKGKQRLVITDFDGMPHEYLIPKDKHVTAH
DGQVVNKGESIVDGPADPHDILRLQGMEALARYITDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVSIVDPGDTRFITGEQLERAEVLDENDKVVRDGKKPAHYNYNLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKKDDLRGLKENVIVGRLIPAGTGLAYHRNRKRVGPRASSS
TASYGFVLDEAEDKTAEDQAA
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgttactagacctatttaagcaagtcacgcaggaagaagagttcgatgcaatc
aagatcggactcgcctcgccagaaaagatccgctcgtggtcgtatggtgaagtaaagaag
cctgagacgattaactaccgcacgttcaagcctgagcgtgacggtttgttctgcgccaaa
atttttggcccgatcaaagattacgaatgcttgtgcggtaaatacaagcgactcaagcac
cgtggggtcatctgtgagaagtgcggtgttgaagtcacgctgtccaaagtgcgccgcgaa
cgcatgggacacattgagttggcaagcccaacggcgcatatctggttcttgaagtccctg
ccttcacgtttgggcatggtactggatatgacgttgcgtgacattgagcgcgtgctttat
ttcgaggcatatgtggtggtcgatggtggcatgacgccgttaaacaagtgtcagcttctg
actgaagacgattacctcgccaaggtagaagagtacggcgacgacttcaccgctctcatg
ggggcggaaggtattcgtgaactacttcgcaagttagacttgccgggtgagctggagcag
ttgcgcaaagatttgggcaacaccggttccgaagccaaaatcaagaaaattgccaagcgc
atgaaagtgctcgaggcgttttcgaagtcgggcattaagcctgattggatggtgctcgaa
gttctgccggtactcccgccggatctgcgcccgctagtgccattggacggtggtcgtttt
gccacatccgatctgaatgacctgtatcgccgcgtaatcaaccgtaacaaccgcttgaag
cgtttgttggagttgaaagcacctgagatcatcgttcgtaacgaaaagcgtatgctgcaa
gagtcggttgactccttgctcgacaacggtcgtcgcggtaaggcgatgacgggcgcgaac
aagcgtgcgctgaaatcgcttgccgatatgatcaaaggtaagtcgggtcgcttccgtcaa
aacttgctcggtaagcgcgtagattactcgggtcgttcggtcatcgtggtcggtccgaca
ctgaaactgcaccagtgcggtttgccgaagaaaatggcgcttgagttgttcaagccgttc
attttccacaagttggaagttctcggcatggcgaccaccatcaaggccgccaagcgtatg
gtcgaggctgaagagccgatcgtttgggatatcttggaagacgtcatccgcgagcatccg
gtgatgttgaatcgtgcgccaaccctgcatcgtcttggtattcaagcgttcgagccggtg
ctgattgaaggcaaggcaattcagttgcatccgctggtttgtgccgcgtttaacgccgac
tttgacggcgaccagatggcagtacatgtaccgatctcgcttgaagcgcagatggaggcg
cgtacgctgatgctcgcgtcaaacaacgtgttgttcccggcttcgggtgagccatcgatt
gtgccttcacaggatatcgtcttgggtctgtattacatgacccgtgagcgtgtggccgct
aaaggcgaaggctcaatgttcatcaacgtcgccgaggcgcagcgtgcttatgaaacaggc
gaagtgtcattgaacgccaaggttttagttcgcatcgctgagaccgataaggatgaaaag
ggagaagttttcgcccgcgtgaaacgctacgagaccacagtcggtcgtgcgatcctttcg
gaaatcctcccgccaggattgccgttcccgcacatcaacaaagccttgaagaagaaagaa
atttctaaactcatcaacgccgcgttccgtcgttgcggcattcgcgaaaccgtaatcttc
acggatcagttgatgtataccgggttcacgtacgcaaccaaagccgggctttcgatctca
atcgatgacatgctggtgccgccgcagaagaaggacatcatttcgacggctgagcaggaa
gtcaaagaaatcgaagcacagtacacctcgggtctggtgactcagggcgagcgttacaac
aaagtggtcgatatctggggccgtgccggcgatcaggtcgccaaggcgatgatggagcag
ctcgggtcagagccagtgacgacgctcgatggtaagcaaacgacgcaggagtccttcaac
gcgatctatatgatggccgactctggtgcgcgtggctcggtcgcgcagattcgccagtta
gcaggtatgcgcggcctgatggccaagccggatggctcgattattgagacgccaattacg
gcgaatttccgcgagggcttgaacgttcttcagtactttatttccacgcacggtgcgcgt
aaaggtcttgccgataccgcattgaagacggcgaactctggttacctcacacgtcgcttg
gtcgatgtgacgcaagacttggttgtgaccgaggacgattgcaaaaccgaaaacgggttg
gccgttaaggcgctcgtggagggcggcgaagtcgtggaggcgctacgtgaacgtatcctc
ggacgcgttgctcagggtgacatcattcatcctgagacgggcaaggtgctcgtgacatct
ggcaccatgatggatgaggacgcaatggatgaaattgatgccgctggcatcgatgaagtc
aaagtgcgtacccctctaacctgcgatacgcgctatggtctgtgcgccaaatgttatggc
cgtgatttgggccgcggctcgatggtcaacgtcggtgaagccgttggcgtcattgcggcg
cagtcgatcggtgagcctggcacacagttgaccatgcgcactttccatatcggcggtgca
gcatcacgtacagcggcgtcaagcagcgttgaggcaaagtcggccggtacgttgaagttc
atgccaaccatgcgtcatgtgctgaacgcacgcaaagaagtgatcgtcatctcgcgcagc
ggtgagatcatcatcgctgacgacgccggtcgcgaacgcgagcgccacaaggtgccctac
ggtgccatgatggctattaaggatggcgacaagatcaaggccgggcaagcgcttgcaaca
tgggatccgcacacccgtccgatcatcaccgagtatgcgggtgaggttcgcttcgagaac
gttgaagaaggggttaccgtcgcgaaacaaatcgacgaaaccaccggactttcaagccta
gtggtgattgacccgaagcgccgtggctccgccgcaactaagggacttcgacctgcggtc
aagctggtggatgcatcgggcaaggaaataaagcaaaacaattccgatgcaccggttgct
tacaccttccagatcggctcgatcattacggtgaaaaacggccagcaagttggtgtgggc
gaagtgatggcgcgtattccgcaagagtcgtccaagacacgtgacatcaccggtggtctg
ccgcgcgttgccgagttgtttgaagcccgttcaccgaaggacgctggcgtcttggcggag
gtcactggtacggtttcgttcggtaaagataccaagggtaaacagcggttggtgattact
gactttgatggaatgccccacgagtacttgatccctaaagacaaacacgtcactgcgcac
gacggacaggtggtgaacaagggtgagtcgattgttgacggcccagccgatccgcacgac
atcttgcgtttgcaggggatggaagcgctagcgcgttacattaccgacgaagtgcaagac
gtttatcgtctacagggcgtgaagattaacgacaaacatatcgaagtgatcgtgcgtcaa
atgctgcgccgtgtatcaatcgtcgatccgggtgacacccgcttcatcaccggtgagcaa
ctggagcgtgccgaggtgttggacgagaacgataaggtggtcagggatggcaagaagcca
gcccattacaactacaacttgctgggtatcaccaaggcgtcactctcgaccgattcgttt
atctcggccgcgtccttccaagagaccacacgtgttctgaccgaagctgccatcatgggc
aagaaggacgatctccgcggcctcaaggaaaacgtcattgtgggacgactcattccagca
ggtacgggtcttgcataccaccgtaaccgtaagcgcgttggcccgcgggcatcgagttcg
accgcgagctacggctttgtattggatgaagccgaggataagacggctgaggaccaagcg
gcctaa
DBGET
integrated database retrieval system
