Brachybacterium faecium: Bfae_07110
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Entry
Bfae_07110 CDS
T00965
Name
(GenBank) DNA ligase D/DNA polymerase LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bfa
Brachybacterium faecium
Pathway
bfa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Bfae_07110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bfa03400
]
Bfae_07110
Enzymes [BR:
bfa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Bfae_07110
DNA repair and recombination proteins [BR:
bfa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Bfae_07110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
ACU84568
UniProt:
C7M9M4
LinkDB
All DBs
Position
809835..812378
Genome browser
AA seq
847 aa
AA seq
DB search
MATREQQVEIDGRRLKLSNLDKVLYPQTGTIKGEVIDYYHRIAPVLVPQATRRPATRKRW
VDGVGTAQSPGKVFFRKDLESHAPQWVPRADIQHSDGTSTYPLVDEPAVLVWLAQLAALE
VHTPQWRFDDALAPAPPDRLVLDLDPGEGAGLPECARVAAWCREILTDMGLESYPVTSGS
KGIHLYAPLDGSADSEEVDAVAHELARALETDHPEEVISTQTRAKRAGKVLVDWSQNNGS
KTTVCPYSLRGRLRPTVAAPRTWEEVEDPALAQLELDEVLARVEDGVDPLAPLGLAAEGD
AEETGPSSAGRARDRLEAYRAKRDPERTPEPVPEAGIGSDAAQEALEDEEPMFVIQEHHA
SSLHWDFRLQHAGVLVSWAVPKGPPLEVDVKRLAVQTEDHPLEYGTFEGTIPEDEYGGGD
VTLWDAGSIEIEKWREDREVIVVCHGRPDGGLGGVPRRFVFLHTGGMRGGRRTAAAKEKA
EANWLLHLMKDQPEPDASRSDDAAPAPEDDAAAPEDAPVAELGEPLAPMLATLGRREDIR
DEDDWAYEMKWDGVRVIATVRGTTVRLTSRGGKDMTAAFPELAELLDAVEPALREAGETV
LDGEIVALDRHDRPSFSRLQQRLGLTRQRDVDRARQQVEAHVMLFDLLVRGGDSLLRTPY
RERREQLFAAVHATEHVQLPHADHGEVEEAIALSKRLQLEGVMAKKESGVYQPGKRTRTW
IKLKNARHQEVVVIGWRHGKGERSGSLGSLLLAVPDSEGELRYAGRVGTGFTDRDLEEIA
ARLRSRSRKTPPVDDVPAADRRDAEWVRADLVGEVQHTERTADGRLRHPVWRGWRPEKNV
ADLQWES
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atggccacgcgagagcagcaggtggagatcgacgggcgcaggctgaagctgtcgaatctc
gacaaggtcctctacccgcagaccggcaccatcaagggcgaggtgatcgactactaccac
cgcatcgccccggtgttggtgccgcaggcgacccgccgccccgccacccgcaagcgctgg
gtcgacggcgtgggaaccgcccagtccccggggaaggtgttcttccgcaaggacctcgag
agccacgccccgcagtgggtcccccgcgccgacatccagcacagcgacggcacctcgacc
tacccgctggtggacgagccggcggtcctggtctggctcgcccagctcgccgcgctcgag
gtccacacgccccagtggcgcttcgacgacgcgctcgccccggcccctcccgaccggttg
gtcctcgacctggaccccggcgagggggcggggctgccggagtgcgcccgggtggccgca
tggtgccgcgagatcctcacggacatggggctcgagagctacccggtcacctccggctcc
aagggcatccacctctatgcgcccctggacggcagcgccgactccgaggaggtggacgcg
gtcgcccacgagctcgcccgtgcgctggagaccgaccaccccgaggaggtcatcagcacc
cagacccgtgcgaagcgcgccggcaaggtgctcgtggactggtcgcagaacaacggcagc
aagaccaccgtgtgcccgtactcgctgcgcgggcgcctgcgccccaccgtcgccgccccg
cgcacctgggaggaggtcgaggatcccgcgctcgcgcagctcgagctcgacgaggtgctc
gcccgggtcgaggacggcgtcgaccccctcgcgcccctcggcctcgcggctgagggcgac
gccgaggagaccggcccgtcgtcggccggacgggcacgcgaccgcctcgaggcgtaccgc
gcgaagcgggacccggagcgcacgcccgagcccgtgccggaggcgggcatcggcagcgac
gccgcgcaggaggccctcgaggacgaggagccgatgttcgtcatccaggagcaccacgcc
tcgagcctgcactgggacttccgcctccagcatgcgggggtgctcgtctcctgggcggtg
ccgaaggggccgccgctcgaggtcgacgtgaagcgcctggcggtgcagaccgaggaccac
cccctcgagtacggcaccttcgagggcaccatccccgaggacgagtacggcggcggggac
gtcaccctctgggacgccggctcgatcgagatcgagaagtggcgcgaggaccgcgaggtg
atcgtggtgtgccacggccggcccgacggtgggctcggcggggtgccgcgccgcttcgtc
ttcctccacaccggcgggatgcgcggagggcgccgcaccgccgcggcgaaggagaaggcg
gaggcgaactggctgctgcacctcatgaaggaccagcccgagcccgacgcgtcgcgctcc
gacgacgccgcccccgcccccgaggacgacgccgccgcccccgaggacgcccccgtcgcc
gagctgggcgagccgctcgccccgatgctcgcgaccctcgggcggcgcgaggacatccgc
gacgaggacgactgggcctacgagatgaaatgggacggcgtgcgcgtgatcgcgacggtc
cgcggcacgacggtgcgcctgaccagccgcggcggcaaggacatgaccgccgcgttcccc
gagctggccgagctcctcgacgcggtggagcctgcgctgcgggaggcgggggagacggtg
ctcgacggggagatcgtggccctggaccgccacgaccggccctccttctcccgcctccag
cagcgcctgggactgacccggcagcgggacgtggaccgcgcccggcagcaggtcgaggcg
cacgtgatgctcttcgacctgctcgtgcggggcggggactcgctgctgcgaacgccctac
cgcgagcggcgcgagcagctgttcgccgcagtgcacgccaccgagcacgtccagctcccg
cacgccgatcacggcgaggtcgaggaggcgatcgccctgtcgaagcggctccagctcgag
ggcgtgatggcgaagaaggagagcggcgtctaccagccgggcaagcgcacccgcacctgg
atcaagctcaagaacgcccggcaccaggaggtggtggtgatcggctggcggcacggcaag
ggggagaggtccggatcgctggggtccctgctgctcgccgtcccggactccgagggcgag
ctgcgctacgcaggccgcgtcggcaccgggttcaccgaccgcgacctcgaggagatcgcc
gcccggctccgctcccggtcccggaagaccccgcccgtcgatgacgtccccgcggcggac
cggcgcgatgccgaatgggtgcgcgcggacctggtgggggaggtgcagcacaccgagcgc
acggccgacgggcggctgcgtcacccggtgtggcgcggatggcggcccgagaagaacgtc
gctgacctgcagtgggagtcctga
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