Branchiostoma floridae (Florida lancelet): 118403419
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Entry
118403419 CDS
T01074
Name
(RefSeq) SCO-spondin-like
Organism
bfo
Branchiostoma floridae (Florida lancelet)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_1
TSP1_spondin
TIL
Ldl_recept_a
TSP1_ADAMTS
Pacifastin_I
TSP1_CCN
TILa
Motif
Other DBs
NCBI-GeneID:
118403419
NCBI-ProteinID:
XP_035658024
UniProt:
A0A9J7KDT1
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Position
16:complement(473935..496378)
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AA seq
1326 aa
AA seq
DB search
MGCTATCGFAPAYRMRDCACPRPANGGQLCAGFNLPPMVSNNYTASQVEFGACDIPTSCP
IDGNWGEWGPWSGCGNCTAGSEVRERMCDSPAAQHGGIPCVGNHTASRPCYVDPILCDIT
CAEGQEYLCKSGPRTCADIQDHNDFEEGDTCTYECGCPDGQVLRDGTCVDRAECPCRYRL
IEEPNFVPTTENNGTEWFIVEEGEVISYECNECTCLMGQLTCTNFECTVDGNWSPWSPWT
NCTVDCGSGVQYRHRSCDDPPPANGGQACAGLAVEELSCNENPCPVNGGPGPWSFWSACS
AMCGIGTKTRTRQCNNPAPANGGDQCSETLFEQVDCLESVCPGIPTISTTCADYEMYTLV
YSTPSLVSGATTQASVLTTSAQATTPLYIPTTPPPSPCADSQFTCVSGECLSSSQVCDGT
ADCTDGSDEDNCVDCIHGQWGSWSDCSLTCGQGVATRNRGITQPAQTGGAECSGPFTESK
NCFTSACPVDGGWSQWTPWSDCDADCDFGIVHRYRNCTDPPPKNGGNICNGSYHETNLCI
NEPCGPDCLEKESVTAEDCLAGFDPCSRSCQGLSNDVTCQLTCQEGCYCAEGTYSQNGEC
VAASECKCIYNGQEYEPGQNITNDCNTCVCENGYMSCTEEDCAVDCGWSVWSIWTPCDKT
CGAGIQQRYRSGSNPPASNGGLPCEGNTVDTKDCFVNTCPGTPAHWGEWAPWSACTATCD
GGERIRTRSCVRYEDTPVTSNCPGNTTETMSCNLQDCQEECLDDKVWKECGNCPRTCLDL
QEGVACEEDCVPGCYCPDGSVLQDDVCVSYAECRCTVNINGEVEEVQPGDTIVKNECENC
TCENSQLVCEVANCSVHGEWSPWTPWSTCTATCIAEDGSVPYQIRHRECNNPEPAGYGEY
CDGQDSQIQNCGTLRCPIDGEWSPWSPWSGCEDPCTDGSQYRFRTCNDPAPEYDGADCEG
NTRVQTKECDEPCTPEECPYTSTWVSAEDCGNSCPRTCAELSAQVMCDTAECSGYCRCDG
DKFFQNGECVVPEQCLCLYNGEFYQPGQTYSVNDCQNCTCINGNMDCTEYNCPIDGNWSP
WSEWSECSEPCDGGIRRKYRNCNSPAPHNGGKLCEGPEIATAICNTQCCDAPGPNWSEWS
QWTICTSSCESGVQNRFRCCNESMPFANCTGESTEERLCNTGACVYDGNWGPWGPWSDCS
VTCGTSLIARYRGCNNPPPSNGGSYCVGLSSHVQTCGIPSCETDTVCANISMSYYDECGP
TGRPKTCQDLYTYFWTCEAGCYCPEGYVLNEDRTACIEPSECYCVDEETGLNWPPGYVLQ
RGCNQW
NT seq
3981 nt
NT seq
+upstream
nt +downstream
nt
atgggctgtacagcaacctgtggtttcgcacctgcttacaggatgagagactgtgcatgt
ccaaggccagcaaacggaggccagctgtgtgctggtttcaacctccctccgatggtctct
aacaactacaccgctagccaggtcgagtttggcgcgtgtgacatcccaacaagctgccca
attgacggtaactggggagagtggggtccgtggtcaggctgtggaaactgcactgcaggc
agcgaggttcgcgaacgaatgtgtgacagcccagctgcccagcatggaggcatcccgtgt
gttgggaaccacacagcgtccagaccgtgctacgtggacccgatcctgtgtgacatcaca
tgtgctgagggacaggagtacttgtgcaagtccgggcctagaacgtgtgccgatatccag
gaccacaatgactttgaggaaggagacacctgtacgtacgagtgcggctgccctgacggc
caggtgctgcgggatggaacctgtgtagacagggctgaatgtccctgcagatacagactc
atcgaggaaccaaattttgtcccaactacggaaaacaacggcacggaatggtttattgtt
gaggagggagaagtcatcagctatgaatgtaacgagtgtacttgcctgatgggacagttg
acatgcacaaacttcgaatgcacagttgacggaaactggagcccgtggtcaccatggacc
aactgtaccgtggactgcggctccggtgtgcagtaccgacacaggagctgcgatgatccg
ccacccgcaaatggcggtcaggcgtgtgctgggctggcagtggaggaactcagctgcaat
gagaacccctgcccagtgaacggtggtcccggcccttggtcattctggtcggcatgctct
gcgatgtgcggtatcggtaccaagacgcgtacccggcagtgcaacaaccctgcccccgct
aacggtggtgaccagtgctccgagacgctgttcgaacaggtggactgtctggagagtgtt
tgtccaggtattccaacaatttctaccacttgtgccgactatgagatgtacactctggtt
tactctacaccaagtctggtgtctggagccaccacacaggcaagtgtactgaccacatct
gcccaagccacaacacctctgtacatcccaaccacaccacccccgtctccctgtgcggac
agtcagttcacctgcgtgtcaggggagtgtctgagtagtagccaggtgtgcgacggtacg
gctgactgtactgacggctcagacgaagacaactgcgttgactgcatccacggccagtgg
ggaagctggagcgactgttccctaacttgcggccagggcgtggccaccaggaaccgcggc
attacacagcctgcacagacaggaggcgcggagtgttccggaccgttcactgagagcaag
aactgcttcacatctgcctgcccagttgacggaggttggtcccagtggacaccatggagc
gactgtgatgcggactgcgattttggaatcgtccacagatacagaaactgcacggatcca
ccacctaagaacggaggtaacatctgcaatggttcttaccacgagacgaacctctgcatc
aatgagccatgtggaccagattgtcttgagaaggaatcagtgacagctgaagactgtctt
gctgggttcgatccctgctcaagaagctgccagggcctcagcaacgacgtgacttgtcag
ctgacgtgccaagaaggctgctactgtgccgagggaacgtacagtcaaaatggtgaatgt
gtggcggcatcggagtgcaaatgtatctacaacggacaagagtacgaacctggccaaaac
atcaccaatgactgcaacacatgtgtttgtgagaatggatacatgagctgcactgaagaa
gactgtgctgttgactgtggctggtctgtttggagcatctggactccgtgtgacaagaca
tgtggggctggtatccagcagagatacaggtctggaagtaacccccctgcaagcaatggt
ggtctgccatgtgaaggcaacactgtggacacaaaggattgctttgtaaacacctgccca
ggaaccccggctcactggggcgagtgggcgccatggtctgcctgcacggccacttgtgac
ggtggggagaggatcaggaccaggagctgtgtgcggtacgaggacaccccggtcacttcc
aactgccccggcaacaccaccgaaaccatgtcctgcaacctccaggactgccaggaggaa
tgtctggatgataaggtgtggaaggaatgtggaaactgtcccaggacatgtctggacctg
caggagggtgtagcctgtgaggaggactgcgttcccggctgctactgccccgacggctcg
gtcctgcaagatgacgtctgcgtctcatatgcagaatgtcgctgcacggtcaacatcaac
ggtgaagtggaggaagtgcaaccaggtgatactatagtcaagaacgagtgtgagaactgc
acctgtgaaaattcccaacttgtctgtgaggtagccaactgctctgtgcacggggagtgg
agtccatggaccccctggtctacctgcacagcaacgtgcatcgctgaggacggcagtgtg
ccataccaaataagacatcgtgagtgcaacaaccccgaaccggctggatacggagaatat
tgtgacggacaggacagtcagattcagaactgtggaacactcagatgtccaattgatgga
gagtggtctccgtggagcccgtggtccggttgtgaagacccgtgtacggacggttctcag
taccggttccgtacgtgcaacgatcccgctccggagtacgacggcgccgactgcgagggc
aacacccgcgtacagaccaaggagtgtgacgaaccctgcactccagaggagtgtccctac
acgagcacatgggtttccgcagaggattgtgggaactcctgtccacgtacctgcgccgag
ctcagcgcacaggttatgtgtgacaccgctgagtgttccggctactgccgctgtgacgga
gacaagttcttccagaacggagagtgtgtggtaccagagcagtgtctgtgtctctataac
ggcgagttctaccagccagggcagacgtactctgtcaacgactgccagaactgcacctgc
atcaatggaaacatggactgcacggagtacaactgcccaattgacgggaactggtcgcca
tggtccgaatggagcgagtgttccgagccgtgcgacggaggcatccgcagaaagtaccgc
aactgtaacagccctgctccacacaatggagggaagctttgtgaaggccccgagatcgcg
accgctatctgcaatacacagtgctgtgacgctcctgggcccaattggagtgagtggtcc
cagtggaccatttgcacatcgtcctgcgagtccggcgtacagaatcgcttccgctgctgc
aacgagagcatgccgttcgccaactgtaccggggagagcactgaggagaggctctgtaat
accggggcgtgtgtctatgatggaaactggggaccgtggggtccttggtccgattgctca
gtaacatgcggcacgtcccttattgctcggtaccgaggatgcaacaacccccctccctct
aacgggggcagctactgtgtgggcctgtccagccatgtccagacctgcggcatccctagc
tgtgaaacagataccgtgtgtgcaaacatcagcatgtcttactatgacgagtgcggccct
accggccgccccaagacctgccaggacctttacacgtacttctggacatgcgaggccggc
tgttactgcccggaaggatatgtactaaacgaggacaggactgcgtgtattgaaccgtcc
gagtgttactgtgtggacgaggaaaccggtttgaactggccacctggatacgtcctacag
agaggatgtaaccaatggtag
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