Branchiostoma floridae (Florida lancelet): 118404821
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Entry
118404821 CDS
T01074
Name
(RefSeq) replication factor C subunit 1-like
KO
K10754
replication factor C subunit 1
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03030
DNA replication
bfo03410
Base excision repair
bfo03420
Nucleotide excision repair
bfo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
118404821
03410 Base excision repair
118404821
03420 Nucleotide excision repair
118404821
03430 Mismatch repair
118404821
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bfo03032
]
118404821
03400 DNA repair and recombination proteins [BR:
bfo03400
]
118404821
DNA replication proteins [BR:
bfo03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
118404821
DNA repair and recombination proteins [BR:
bfo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
118404821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
Rad17
AAA_30
AAA_22
AAA_33
AAA_16
AAA_14
AAA_17
AAA_18
RuvB_N
AAA_19
PTCB-BRCT
BRCT_2
RNA_helicase
TIP49
DNA_pol3_delta
nSTAND3
AAA_5
NTPase_1
Motif
Other DBs
NCBI-GeneID:
118404821
NCBI-ProteinID:
XP_035660073
UniProt:
A0A9J7KI44
LinkDB
All DBs
Position
17:2643396..2677174
Genome browser
AA seq
995 aa
AA seq
DB search
MDIRRFFGAAPGATKTKPVQKTASSAKEKGGVKKSSQTKRKAAVIYDSDSDEEVPPVKQQ
KTAAAKSAKPNKTEVKSPPSRKQFDPKPVLKPTSAADFFGAASPTHRVSRTTVVAKKRSG
HDAGKANDVDSEADKELHDDEAFMETLAELDKSRKKSATMSISPDNKKKENGTHEKKPTK
TRVDQTSPKKTREKSPTSSASPKKASPQKSKYFDKTEDQKMKKKIKLESQDKDEAKPDQP
KKAKKPSPVKTKTEKTPSPKKSPAKDSNQDAEKKPARGAYRAYLTREGPRALGTKEIPQG
EENCLGGLTFVLTGILESMERHEAKELVERYGGKVTSSVSKRTSYVVVGRDAGESKLDKV
SQLGLKTLDEDGLLELVKTLPGKPYDLPPEATSKSKKSPPKKSPNKPEPAATTRKPVASS
SRVESPKKPAASLTTTDSPEPSLLWVDKYKPQTTKAIIGQQGDRSNVKKLLKWLQAWPKH
HSGRQVKEDGSGFRAALLSGPPGVGKTTAATLCCQELGFTYIELNASDTRSKRSLQEEVS
EALTTRSIVGFQKQEDAGTMRQAVIMDEVDGMAGNEDRGGIAELINLIKHTKVPIVCMCN
DRSHQKMRSLVNYCFDLRFQRPRVEQIRAAMMSMAFKEGLKIPPPALNQIIEATNHDVRQ
VIHQLYMWSVQDKALTFDQAKEASKQAQKDIKQGPFEVTRKVFSSGEDTARMTIMDKSDL
FFNDYSMMPLFVQENYPNVLPNAARNNMKKQLSLLSQTADSICDGDLVDKLIRSRQSWGL
LPTQAIYASVLPGEYMRGHLSGMISFPGWLGQFSKQNRLRRLLQELHMHMHLRTSCTKKS
LQEDYLDPLRRRILNLLVTQETEGVPEAVELLSAYDLMREDYDGMLELTEFKGRPNLAEK
VNSKVKSAFTRAYNKEAHMQPYSTSAAPKKKRGGAANSMDMEDGGEGGALEESDEEKEDP
KLDPMIKMKKPTAAKGKSDSEKGKGRGKGRGKKSS
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atggacattcggcgcttctttggagcagcgcctggcgccacaaagaccaaacctgtacag
aagacggcatcttcagcaaaggaaaaaggtggcgtgaagaagagtagtcaaaccaagcgg
aaagcagcagtgatttacgactcagattcagatgaagaagtgccgcctgtcaaacaacag
aaaactgcagcagcaaaatcagcaaaacccaacaaaacagaagtaaagtcaccccccagt
agaaagcagtttgaccccaaaccagtgttaaagccaacctccgctgcagacttctttggc
gcggcgtcaccaactcacagagtcagtaggacaacagtggtcgccaaaaagagaagtgga
catgatgcaggcaaggcaaatgatgttgactcagaagctgacaaggagcttcacgatgac
gaagcgtttatggaaacgctggcagaacttgacaagagtcggaagaaatcagcaactatg
tcaatttcccctgacaacaagaagaaagaaaacggaacacatgagaaaaaaccaaccaaa
acaagagtagatcaaaccagtcccaagaagacgagagaaaaatctccgacctctagcgca
agccccaagaaagccagccctcagaagagcaagtactttgacaagactgaggatcagaag
atgaagaaaaaaatcaaactagagtcacaggataaggatgaagccaaaccagatcaacca
aaaaaagcaaagaaaccttcaccagtgaagaccaagactgagaagactccttcacctaag
aagtcgccagcgaaagactccaaccaagacgctgagaagaaacccgcgcgaggagcgtac
agagcttacttaacccgcgaaggcccgagggcgctggggactaaggagattccacaggga
gaagaaaactgcttaggaggtttgacctttgtgctgacgggaatcctggagtcgatggaa
cgtcacgaggccaaggaactggtagagaggtacggagggaaagtcacgtcttcagtcagc
aagagaaccagttacgtggtggtggggagggacgctggggagagtaaactggacaaggtt
tctcagcttggtctcaaaaccttagatgaagacgggctgttggaattagtaaagacccta
ccagggaagccgtatgaccttcctcctgaggcaacaagcaagagcaaaaagtctccacca
aagaaaagtccaaacaagccagagcctgcagccacaactaggaagccagtggcctctagt
agccgtgtcgaaagcccgaagaagcctgctgcaagtctaacaacaacagatagcccggaa
cccagcctcctgtgggtggataagtacaagcctcagacgaccaaggccatcattggtcag
cagggggaccgcagtaacgtgaagaaactgctgaagtggctacaggcgtggccaaagcat
cattcaggaaggcaagttaaggaggatggttctggtttccgggcggcgctactgtccgga
ccccctggggtggggaaaacaacagcggcaaccctctgttgtcaggagctgggttttacc
tacattgagctcaacgctagcgacacccgcagcaaacgtagcctacaggaggaggtttcc
gaggctctcaccacacggagtatcgtgggcttccagaaacaagaggacgccggtaccatg
cgtcaggcagtgattatggacgaggtggacggcatggcaggaaacgaggaccgtggcggg
atcgcagagctcatcaacctgatcaaacacacgaaggtgccgatcgtctgcatgtgcaac
gacaggtcacaccagaagatgcgctcgctcgtcaactactgcttcgacctgcggttccag
aggccgcgcgtggaacaaattagggctgccatgatgagtatggccttcaaggaaggactg
aagattcctcccccggctcttaatcagatcatcgaggcgaccaatcacgacgtccgacag
gtcatccaccagctgtacatgtggagtgtgcaggacaaggcgctgacctttgaccaggcc
aaggaggcctccaaacaggcgcagaaggacatcaaacagggtccttttgaagtgaccagg
aaggtgttcagctcaggcgaggacacagcgaggatgaccatcatggacaagagtgacctg
ttcttcaatgactacagcatgatgccactgtttgtccaggaaaactacccaaacgttctg
ccaaatgctgccaggaataatatgaagaagcagttgtctctactcagtcaaactgctgac
agcatctgtgatggagaccttgtagacaaactcatccgaagtcggcagtcgtggggactc
ctaccaactcaggccatctatgcctctgtgctgccgggtgagtacatgcgaggtcacctc
agcgggatgatcagcttccccggctggctgggacagttctccaaacagaaccgactgaga
agactcctgcaggagctacacatgcacatgcacctcagaacgtcttgtaccaagaagagc
ctgcaggaagactacctcgatccacttcggaggagaattttaaacctcctggtcacacag
gagacagagggtgtgccagaagctgtggagctcctgtcagcctatgacctaatgagggaa
gactatgatggtatgctggagttgacagagttcaagggtcgtcctaacctcgctgagaaa
gtcaatagtaaggtaaaatcagccttcacacgtgcctacaacaaggaggcccacatgcag
ccttactccacaagtgctgctcccaagaaaaagcgaggaggggcagcaaacagcatggac
atggaggatggtggggagggtggcgctttagaggaaagtgacgaagagaaagaagatccc
aaactagatcctatgattaagatgaagaagccaacagcagccaaggggaaaagtgacagt
gagaaggggaaggggcgaggcaaggggagggggaagaagtcctcttga
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