Branchiostoma floridae (Florida lancelet): 118405806
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Entry
118405806 CDS
T01074
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
118405806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bfo03400
]
118405806
Enzymes [BR:
bfo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
118405806
DNA repair and recombination proteins [BR:
bfo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
118405806
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT_2
BRCT
DNA_ligase_IV
RNA_ligase
LIG3_BRCT
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
118405806
NCBI-ProteinID:
XP_035661466
UniProt:
A0A9J7HKY0
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All DBs
Position
18:complement(11217156..11234168)
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AA seq
917 aa
AA seq
DB search
MAVAATVPFSHLCAMLEGVDRAKGKDNKKKVFKEFLDKWREFHNSVHKDDPNTEDSFYPA
MRLILPQCERERIAYGIKEFTLAKYYIEILGLAKDSPDALKLLKYRAPSHAKGEAGDFAA
VAYFVLKNRCPEKGSLTIQEVNDLLDSIATNNAAKNKEEVRKSILKLLRSTSAMEQKWLI
RMIMKELKMGMNQAGVFAVFHPDAEDLFNVTNSLAKVCTDLCDPRVRLNEIAISLFSPFK
PMLGQRIPLDGVEKEMHHEMFYIETKFDGERMLLHKNGDTYKYFSRSGKDYTHQFGAHPL
EGSLTPYIHNCFASHVKSCILDGEMVGYNPQTKSIMSKGDKFDIKNMAEDSDLQTMYCVF
DILLLNGQKFANSPLRERVDYLDKLFTPIEGRLFLGDRKEARTKAEVIDALNEAIDRREE
GLVIKYPGSKYAPDKRKGSGWLKVKPEYVDGLMDQVDVVIVGGYFGKGRRSHMISHFLCA
VAVQSNTPGDKPALFHTFCRVGSGYTLKELYQMGQRLHPHWRVFDKKKPPKNNIMFPSGY
KEAPDVWIDPEQSLIVQIKAAEIIESDKFKTGCTLRFPRLEKVRDDKEWFDCMTLEELDD
MRKNAEGKLASRHAGIDDSGEPSKKKRRTVVRVEKPITVAPQFKAADTSKVQQVSTIFED
REFCIINGPPEHGKADLERKVVAYGGTVVQAPGPDTVCVLAHKVNVRVNNIISGGKYDVV
KADWLLRCWDAKQCLPWLPSHMIHMSPDTAAQFALQFDRHGDSFTDDATVESMKEVFEKI
GEEKSSSRVTSEDIAEMEEKYFPNESPLGLFRLCRLYVDNCDVIGDQSTRIKDCPLDLVA
LEARFHGATVSPILDSDVTHVMFHTSDLSRLDEVKALRRQRTKKHHLVTPAWVSECIQTG
AMLTERDYEPYSTTDST
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggcagctacagtgccatttagccacctgtgtgctatgctggagggagtggac
agggcaaaggggaaggacaacaagaagaaagtcttcaaggagttcctagacaagtggagg
gagttccacaactccgtacacaaggatgatccaaacacagaggattccttctaccctgcc
atgagactcatcctgccacagtgtgagagggagagaattgcttatggtatcaaagagttt
accctcgctaaatactacattgagatcctgggtttagccaaagacagcccagatgcattg
aaactgctgaagtacagggcaccctcacatgctaaaggggaagcaggtgattttgcagct
gtggcatactttgtgctaaagaacaggtgtccagagaagggcagtttgacaattcaggag
gtgaacgacctcctagactccatagcaaccaacaatgccgccaagaacaaagaggaagtg
aggaagagtatcctgaaacttctcaggagtacatcagccatggaacagaaatggctgata
aggatgattatgaaggagttaaagatgggaatgaaccaggccggagtgtttgcagttttc
caccctgatgcagaggacctcttcaatgtcaccaacagtctggccaaggtgtgcacagac
ctgtgtgacccgcgtgtccggctgaatgagatagccatcagtctgttctctccattcaaa
cccatgctggggcagaggataccactggatggggttgagaaggagatgcaccatgagatg
ttctacatagagaccaagtttgacggtgagaggatgttgttacacaagaatggagacacc
tacaagtacttctctagatctgggaaagactacactcatcagtttggtgcccacccattg
gaaggtagtctcaccccatacatacacaactgttttgccagtcatgtgaagtcctgtatc
ctggatggagagatggtgggatacaaccctcaaaccaagtctatcatgtctaaaggggat
aaatttgacatcaaaaacatggcagaagacagtgacctccagaccatgtactgtgtgttt
gatatactgctgctgaatggacagaagtttgccaacagccctctgagagagagggtggac
tatctcgataaactttttaccccaatcgaggggcgtttatttctgggagacagaaaggag
gcaaggacaaaagccgaggttattgatgccttgaatgaagccattgacagaagggaagaa
ggcctggtgatcaagtacccagggtccaagtatgctccagacaagagaaaaggaagtggc
tggttgaaggtgaagcctgagtatgtagatggactgatggaccaggttgatgttgtgatt
gtaggtggctactttggtaaagggcgtcgcagtcacatgatctcccacttcctgtgtgct
gtggccgtccagtccaacactcctggagacaagcctgctctcttccacacattctgcagg
gttggttccggctacactctgaaggaactgtaccagatgggccaacggctccacccacac
tggagggtctttgataagaagaagccaccaaaaaacaacatcatgtttccctctgggtac
aaggaagctcctgatgtctggattgatccagagcagtcacttattgttcagattaaagca
gcagagatcatcgagagtgacaagtttaagacagggtgtacgctacgtttcccacgtctg
gagaaggtgcgagatgacaaggagtggtttgactgcatgacccttgaagagctggatgac
atgagaaagaatgcggaggggaaacttgcctctaggcatgctgggatagatgacagcgga
gagccgtccaagaagaagcgtcgtacggtggtccgtgtggagaagccgatcacagtggcg
cctcagttcaaggcagcagacacctccaaagtgcagcaggtgtctaccatatttgaagac
agagagttctgcatcattaacggccctcctgagcatgggaaagcagacctggagaggaaa
gtggtggcgtatggaggcacagtggtccaggctccgggaccagacacagtctgtgtgctc
gcacacaaggtcaatgtcagggtcaacaacattataagtggtgggaagtacgatgttgtc
aaggctgactggctactgagatgttgggatgcaaagcagtgccttccatggctgccctcc
cacatgatccacatgtcccccgacacagcggcacagtttgctctgcagtttgatcgtcat
ggagacagcttcactgatgatgcaactgtggaaagtatgaaggaggtctttgaaaagatt
ggggaagagaaatcaagttcaagggtcaccagtgaagacattgcagaaatggaggaaaag
tacttcccaaatgaatcaccgctgggccttttcagactctgcagattatatgtggacaac
tgtgatgtcattggagaccagtcaactaggatcaaagactgtcccttggacctggttgct
ttggaggcacgtttccatggagccacagtgagccctatcctggacagtgatgtcactcat
gtgatgttccacacaagtgacttgagcaggctggatgaagtgaaggcactgagaagacag
aggacaaagaagcaccatcttgtgacaccagcctgggtgtctgagtgtatccaaactgga
gctatgctgacagagagggactacgaaccttacagcaccacagactctacatag
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