Branchiostoma floridae (Florida lancelet): 118406146
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Entry
118406146 CDS
T01074
Name
(RefSeq) collagen alpha-1(X) chain-like isoform X1
KO
K23455
collagen type VIII alpha
Organism
bfo
Branchiostoma floridae (Florida lancelet)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
Motif
Other DBs
NCBI-GeneID:
118406146
NCBI-ProteinID:
XP_035661918
UniProt:
A0A9J7KJK2
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Position
18:complement(15391981..15398005)
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AA seq
474 aa
AA seq
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MDLKTCILLLWTFPLTLGFLFDDDKPAVPPTQSTGPQPTCKIRCTGTEGGVSLPIVGEKG
DPGPAGEPGSPGVPGTPGQPGPPGLTGQKGSAGGPRGFPGPVGAPGVIGPPGTSGPQGPP
GPPGPPGPSLPAGPREPYGSPYFDQPAGPARPGPPGPQGPPGPPGLPGLCKECTSVTTGR
FNPSAAGPGLPGPPGQPGVPGPPGMLGAPGVPGAKGDKGARGDPGPPGTPGYTQPGSQSG
YSSYPGPPGPPGQPGSPGTPGPIGAPGSPGPIGGPGIPGSKGEQGWIGPTGLPGQIGPQG
PAGPPGPPGPGLSEEDIKRIFPQRRRPEVTPKPDTVPVVFSAVHTGSGPSGQDRIIFDKV
LINTGTEKPRPRGHRGTGGFDGHSFTSEKPGIYFFTFHVLCEHPENQYEPVQLVRNGVTI
VSLQQGMNMSGHAMTSNSLYLQLNPRDRVWLRVKENVKIRPNATFSGMLIHTLQ
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atggatttgaagacgtgcattctcttgctctggacatttccgttaacgttggggttcctg
tttgacgacgataagcctgcagttccgcccacacagagcacgggaccgcagcccacctgt
aagatccggtgcaccggtacggagggcggggtgagcctgcctatcgtgggggagaagggt
gacccaggcccagctggagaacccgggtcgcctggggtcccgggtacacccgggcagccg
ggtccacctgggttaaccgggcagaaggggtcagcagggggccccagggggtttcctggc
cctgtcggcgcacccggagtgattggcccgcctggcacaagtggccctcaaggacctcct
ggcccgcctggccctccggggccatcgttaccagctggcccacgagagccgtacggaagt
ccgtattttgaccaacccgccggacccgcccgaccaggcccccctggcccacaaggaccc
cccggccccccaggattacctggtctctgcaaggaatgcacctccgttacaaccggtcgc
ttcaatcccagcgctgcaggtccgggactacccgggccacctggccaacccggagtcccc
ggcccacccggtatgctgggtgctcccggcgtcccgggcgcaaaaggagacaaaggagcc
cgcggcgacccaggtcccccgggcacacccgggtacacccagcctggctcgcagtctggc
tacagcagctaccccgggccaccaggacccccgggtcaacccgggtcgccgggaacccca
ggcccgatcggcgctcccggcagccccggtcccatcggcggcccgggcattcccggcagc
aaaggcgaacaggggtggatcggcccaaccgggttacccgggcagattgggccgcagggt
cccgctggcccgccggggccgcctggacctggcctcagcgaggaggacatcaagcggata
ttcccgcagcgacgacgacctgaggtgaccccaaaaccggatactgtgccagtggtgttc
tcagcggtgcacactgggagcgggcccagcggacaggataggatcatcttcgacaaagtg
cttataaacacaggaacagaaaaacctcgaccaagaggtcaccggggaacaggaggtttt
gatggccacagcttcacgtcagagaagcccggcatctacttcttcacgttccacgttctg
tgcgagcacccggagaaccagtacgaaccggtccagctggtcagaaacggcgtcaccatc
gtgtccctgcagcagggcatgaacatgtctggccacgccatgaccagcaactccctgtac
ctgcagctcaacccccgggatcgcgtctggctccgcgtcaaggagaatgtcaagatacgg
cccaatgctaccttctccggaatgctcatccacacgctacaatag
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