Branchiostoma floridae (Florida lancelet): 118412004
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Entry
118412004 CDS
T01074
Name
(RefSeq) collagen alpha-3(IV) chain-like isoform X1
Organism
bfo
Branchiostoma floridae (Florida lancelet)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C4
Collagen
Motif
Other DBs
NCBI-GeneID:
118412004
NCBI-ProteinID:
XP_035670468
UniProt:
A0A9J7KTT7
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Position
3:14105872..14127506
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AA seq
747 aa
AA seq
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MLLLSLTTLLVLLERSHGTKKGPPMRSMCCPGVQGPQGPRGSTGPAGPPGPPGYTGEKGD
PGQPGMMGLSGRQGPMGPKGPKGPPGRQGDDGLPGLQGLPGLKGHKGDSGTPGFPGLKGH
RGFPGQNGRPGDDGKSGSPGRPGDMGPPGLPGKQGFPGAKGHAGTPGPAGPAGVPGQRGQ
RGEPGLKGPPGPGGLPGYPGPPGEKGLDGKKGDRGYSGTPGKAGPPGPAGRPGGPGSAGI
PGQDGKDGEKGQAGHKGPPGFMGPIGPAGPPGPSGERGTPGAPGRPGEPGNSGRAGYPGL
KGESGPPGDPGMMGRPGKSLRGPEGPPGPPGPPGLGLEGPQGLPGPPGQVKTLKGPPGPP
GPPGGRGPSGGPGALGEPGRPGVGLPGGPGPKGERGSPGIGEIGPVGPEGPSGRPGEPGE
PGQRGSPGPPGASGLPGAKGESGLAGVGLPGPPGARGPIGPAGVGIKGDRGLDGLMGPQG
PPGFGQKGERGAPGFRGPRGDSGIPGSQGRQGPPGVSLGLLARHSQNTTVPNCPPGMRQL
WSGFSLLHVEGNERAHKQDLGRAGSCLPRFSTIPFMSCEPDDTCNYASRDDKTYWLSTVE
TSAEKPLIPVRGLEIKKFVSRCSVCQTPEVILALHSLDASAIPDCPDGYISLWTGYSFLM
HTAAGEGGGQELTSPGSCLQYFRPVPFIECQGSLGTCDIIGNSLSFWLTDVPEDEVQQFQ
RPQAQSGTIFTMRNLLSKCRVCMATDV
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgctgagtttaaccacgctgctggtgcttttggagagaagtcatgggacgaag
aagggcccgcccatgaggtccatgtgttgtccgggggtacaggggccacagggccctagg
gggagtactggtcctgctggtccaccgggaccgccagggtacacaggcgagaagggggac
cctggacagccgggaatgatgggtctttcaggacggcagggtccgatgggtccaaaaggt
ccgaaaggtccaccgggaagacaaggtgacgatggcttgccaggtcttcaaggacttcca
ggattgaagggacacaaaggtgacagtggaacacctggctttcctggactcaaggggcat
aggggttttcccggacaaaatggccgtcctggcgacgacggaaaatctggttccccgggc
agaccaggggacatggggccacctggcctacccgggaaacaaggttttccaggagccaaa
ggccatgccggcacaccgggcccagccggtcctgcaggtgttcctggacagcgtggccaa
cgaggagagcctggactgaagggtccaccaggtcctggaggattgccgggatacccggga
ccaccgggtgagaagggtctagatggtaaaaagggtgaccgaggttactccgggactcca
gggaaggctggtccgccaggccccgcggggcgcccgggaggtccaggatccgcggggata
ccaggacaagatggaaaagacggagagaaaggacaagccggtcacaagggaccgcctggc
ttcatggggcccataggtccagcaggtccaccgggcccttctggagaaagaggtacacca
ggagctccgggtagaccgggcgaaccgggaaattctggcagagccgggtatcctgggtta
aagggagaatctggacctcctggagatccaggaatgatggggagaccgggaaagtccctc
agaggacccgagggtccgccgggaccaccaggtccaccaggattggggcttgagggacct
cagggactaccaggaccccctggacaggttaagactctgaagggcccccctggtccacct
ggaccacctggaggtagagggccgtcgggaggtccgggggcactcggtgaaccaggaaga
cctggtgtgggactccctggtggaccgggaccgaagggagagcggggttctcctggtatt
ggagaaattggaccagtgggcccagagggtcccagcggtagaccaggagagccaggagaa
cccggacagagaggatcgccaggccctccaggagcgtcaggattaccaggagccaaggga
gaaagtgggttggccggtgtggggctccctggaccacctggagcaagaggaccgatcggc
ccagctggagttggtatcaagggagacaggggactggacggtctgatgggacctcagggg
ccacccggctttggtcagaagggtgagcgtggagctcctggattccgtggacctcgtggt
gattcaggtatccctggatcccaaggtcgccagggtccccctggtgtcagtctgggactg
ttggcccgtcatagccagaacacaacggtacccaattgtccacccggcatgagacagctc
tggtcaggcttcagtctgctccacgttgaaggcaacgagagagcacacaaacaggatctg
ggacgtgctgggtcctgcctccccaggttcagtacaatacccttcatgtcctgtgagcct
gacgacacctgtaactatgcgagcagagatgacaagacttactggctgtctacagtggag
accagcgcggagaagccactaatacctgtcagggggctggaaattaagaagttcgtgagc
aggtgctcggtgtgccagaccccagaggtcattttggcactgcacagcttggacgcaagc
gctattcctgactgccctgacggttatatcagcctatggacaggatacagctttttaatg
cacacagccgctggtgaaggcggtggccaggagctgaccagtcccggaagttgtcttcag
tacttccggcccgtacccttcatcgaatgccaaggctccctgggaacgtgtgacatcatc
ggcaactctttaagcttctggttaacggatgtgcctgaagatgaagtacagcagttccag
cggcctcaagcacagtccggaaccatatttaccatgagaaacctccttagtaaatgccgt
gtatgtatggctacagatgtgtaa
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